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Re: [fiji-devel] Re: Release of OMERO and Bio-Formats 4.4.7

Posted by ctrueden on Apr 30, 2013; 2:29pm
URL: http://imagej.273.s1.nabble.com/Release-of-OMERO-and-Bio-Formats-4-4-7-tp5002799p5002867.html

Hi Sebastian,

> when will the 4.4.7 release available via the Fiji Updater? My version
> still say 4.4.5 and Fiji is up-to-date?

If your Fiji is up to date, your version (seen via Help > About Plugins >
LOCI Plugins) should say "4.5-DEV".

Currently, Fiji provides builds from the 4.5.x "development" line (develop
branch of the Git repository), rather than from the 4.4.x "stable" line
(dev_4_4 branch).

For details, see:
    http://fiji.sc/Bio-Formats#Source_code

All bugfixes in the 4.4.x stable line should also be part of the 4.5.x
development line. If there is a recent bugfix you need that has not yet
been pushed to Fiji, let us know and I can upload a new version of 4.5.x.

Regards,
Curtis


On Tue, Apr 30, 2013 at 1:51 AM, Sebastian Rhode <[hidden email]> wrote:

> Hi,
>
> when will the 4.4.7 release available via the Fiji Updater? My version
> still say 4.4.5 and Fiji is up-to-date?
>
> Cheers,
>
> Sebi
>
> Am Donnerstag, 25. April 2013 15:54:02 UTC+2 schrieb Melissa Linkert:
>
>> The OME project is pleased to announce the release of OMERO and
>> Bio-Formats 4.4.7.
>>
>> Today we are launching 4.4.7, including several new features and bug
>> fixes across all components.
>>
>> For OMERO, this includes:
>>
>> * usability and performance improvements in viewing of 'Big' tiled
>> images;
>> * new permission features - import data and assign to another user
>> ('Import As'), view all data from all users in a group at once;
>> * OMERO.web support for 'Split View Figure' and 'Thumbnail Figure'
>> creation;
>> * OMERO.web support for copy-and-paste of rendering settings;
>> *  addition of several utility functions in the OMERO.matlab toolbox to
>> load and manipulate objects from the server;
>> * review and testing of the C++ bindings;
>> * improved checksum calculation to detect errors on file upload;
>> * and the addition of array columns in OMERO.tables.
>>
>> Bio-Formats improvements include fixes for the following formats:
>>
>> * Amira - read files over 4 GiB;
>> * APNG -  remove dependency upon Java ImageIO;
>> * Bio-Rad Gel - improve pixel offset calculation;
>> * CellSens - prevent tag parsing errors;
>> * Deltavision - allow reading of truncated files, fix errors when
>> importing into OMERO;
>> * FITS -  support truncated files;
>> * FV1000 - cope with missing thumbnails;
>> * Gatan - improve metadata parsing;
>> * Imaris HDF - correct channel count;
>> * Leica LIF - supported tiled images and parse User-Comment tags;
>> * Metamorph - correct channel count;
>> * Micromanager - correct file finding for single-channel datasets;
>> * Nikon ND2 - many improvements to metadata parsing
>> * SimplePCI - improve Z and T dimension calculation;
>> * Olympus SIS TIFF - read pixel sizes and exposure;
>> * Olympus ScanR - correct well linkage;
>> * TIFF - various fixes for reading tiled images
>> * Trestle - improve support for sub-resolutions;
>> * Zeiss CZI - parse Z positions, parse linescans, fix ordering of
>> stitched files;
>> * Zeiss LSM and Zeiss ZVI - improve ROI parsing;
>> * improve export to multi-file datasets;
>> * and Bio-Formats now uses slf4j for logging rather than using log4j
>> directly, enabling other logging implementations to be used, for example
>> when Bio-Formats is used as a component in other software using a different
>> logging system.
>>
>> Full details are available on the OMERO Github milestone and the
>> Bio-Formats Github milestone pages:
>> https://github.com/**openmicroscopy/openmicroscopy/**issues?milestone=5<https://github.com/openmicroscopy/openmicroscopy/issues?milestone=5>
>> https://github.com/**openmicroscopy/bioformats/**issues?milestone=4<https://github.com/openmicroscopy/bioformats/issues?milestone=4>
>>
>> As always, the software is available from http://www.openmicroscopy.org/*
>> *site/products/omero/downloads<http://www.openmicroscopy.org/site/products/omero/downloads>and
>> http://www.openmicroscopy.**org/site/products/bio-formats/**downloads<http://www.openmicroscopy.org/site/products/bio-formats/downloads>.
>>
>>
>>
>> For information on the upgrade from OMERO 4.3 to 4.4, see the upgrade
>> guide for system administrators (http://www.openmicroscopy.**
>> org/site/support/omero4/**sysadmins/server-upgrade.html<http://www.openmicroscopy.org/site/support/omero4/sysadmins/server-upgrade.html>
>> )**.
>>
>> If you have not upgraded from 4.3 to 4.4 yet, then please upgrade
>> directly to 4.4.7 as explained on the upgrade page linked above.
>>
>> For full details of the next major release, see the
>> https://trac.openmicroscopy.**org.uk/ome/milestone/OMERO-4.**4.8<https://trac.openmicroscopy.org.uk/ome/milestone/OMERO-4.4.8> milestone page.
>>
>> Kind regards,
>> The OME team
>>
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