Re: 3D Viewing with multiple channels
Posted by
gankaku on
May 04, 2013; 8:51am
URL: http://imagej.273.s1.nabble.com/3D-Viewing-with-multiple-channels-tp5002914p5002922.html
Hi Celeste,
Another suggestion would be to actually separate the individual channels either by the command >Image>Color>Split Channels if you have only red, green and blue or any combination of two of them. Starting with a .lsm file should give you directly a composite stack or you can convert it in one, as Curtis already suggested using and split the channels thereafter using the >Image>Color>Channels Tool...
Once you have the individual channel stacks you can add them individually to the 3D viewer. Thanks to this extremely powerful tool from Benjamin Schmid you now have the advantage that you can individually change their properties in the 3D viewer e.g. assign arbitrary colors or display one channel as volume another as ortho-slices and the third as a surface reconstruction with a certain transparency. Like this you can create very nice views.
Hope it helped, have fun and success!
Jan
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