Posted by
Glen MacDonald-2 on
May 31, 2013; 3:26pm
URL: http://imagej.273.s1.nabble.com/Computer-for-high-resolution-image-stack-analysis-tp5003166p5003175.html
Hello,
Did you increase the memory allocation to FIJI? The default allocation is probably not enough for a 2kX2k image.
instructions are in these 2 places.
http://imagej.nih.gov/ij/docs/install/index.html select your operating system
http://imagej.nih.gov/ij/docs/guide/146-27.html#toc-Subsection-27.13 Scroll to section 27.13.12 Memory & Threads…
Glen MacDonald
Core for Communication Research
Virginia Merrill Bloedel Hearing Research Center
Cellular Morphology Core
Center on Human Development and Disability
Box 357923
University of Washington
Seattle, WA 98195-7923 USA
(206) 616-4156
[hidden email]
On May 31, 2013, at 4:07 AM, Abigail Nunn <
[hidden email]> wrote:
> Hi,
>
> I wondered if anyone could provide me with some advice about how to choose
> a new computer for use in imaging. I have some experience of using Fiji to
> process nonlinear microscopy image stacks, and I have noticed that the 3D
> Object Counter does not run on most of the computers I have tried,
> including a 16 GB RAM computer, for high resolution stacks (2048x2048x30).
> I have also had problems running the PureDenoise plugin with stacks of this
> size. I need to purchase a new computer for image processing and analysis
> if these image stacks, and I wondered if anyone could provide any advice on
> specifications I should look for.
>
> Many thanks,
>
> Abigail
>
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