Re: 3D (stack) mask

Posted by michele_casanova on
URL: http://imagej.273.s1.nabble.com/3D-stack-mask-tp3693734p5003524.html

Hey Eric,

I found how to do it... (it is probably not helpful for you after 3 years but let's write it for the next users :) ).

If you have a dataset with the grey-scale image and a dataset (mask) which is a binary image only with 0 and 1 values, you can apply the 3D mask to your image by using the image calculator:

Process - > Image Calculator -> select your image as image1 and your mask as image2, and select "Multiply" as the operation -> OK

Be careful though: your mask should have only pixels with 0 or 1 as values... otherwise you will not extrapolate the mask correctly!

Hope it helps,

Cheers,

Michele

--
Michele Casanova, PhD candidate
MSc ETHZ ME
Institute for Biomechanics
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