Opening a folder as stack

Posted by Richard Mort-2 on
URL: http://imagej.273.s1.nabble.com/image-acquisition-under-linux-tp5003802p5003815.html

Hello All,
When I open a folder as a stack by drag and drop the files open in the
correct order. Also when I go file>image sequence> and select a random
image from the folder I get the same behaviour. However whan I use the
macro command:

dir = getDirectory("Choose directory");
run("Image Sequence...", "open=&dir starting=1 increment=1 scale=100");

or

file = File.openDialog("Choose a file");
run("Image Sequence...", "open=&file starting=1 increment=1 scale=100");


....my stack gets scrambled. I'm sure I'm missing something simple here
but maybe there is a better approach. My file naming is a bit odd and I
could relabel them all first but I have lots of images. Also the Stack
Sorter command "Sort by Label" works on the scrambled stack but it is
not recordable.

File name exmaple:

B16_F1_28_A_rec0000.modif.tif.0004.tif
B16_F1_28_A_rec0000.modif.tif.0005.tif

Hope someone can help
Best
R

--
Dr Richard Mort
MRC Human Genetics Unit
MRC IGMM
University of Edinburgh
Western General Hospital
Crewe Road
Edinburgh.
EH4 2XU, UK

Tel: [phone]
Fax: [phone]


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