Re: Isolate line in binary image
Posted by
dscho on
Jul 22, 2013; 4:13pm
URL: http://imagej.273.s1.nabble.com/Isolate-line-in-binary-image-tp5004064p5004072.html
Hi Jen,
On Sun, 21 Jul 2013, JenIrl wrote:
> I'm writing a macro to automate line length measurements. I need a way
> to remove the noise from this image so only the squiggley line is left.
> I can manually cut the area out, but this is not efficient. Any ideas on
> a filter I could use would be very much appreciated
Possibly a good way would be to preprocess the image with the linear
kuwahara filter:
http://fiji.sc/Linear_Kuwaharafollowed by a simple threshold (you will have to determine which automatic
threshold method gives the best result) and then simulating the length
measurement by measuring the area of the skeletonized result.
Good luck!
Johannes
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