Re: Frame average plugin (4D HyperStack)

Posted by Krs5 on Jul 31, 2013; 9:19am
URL: http://imagej.273.s1.nabble.com/Frame-average-plugin-4D-HyperStack-tp5004203p5004227.html

Hi Jose,

I could not open the website but might Grouped Z Projection (Image > Tools > Grouped Z Projection) do what you want? It asks for starting and ending frame but is smart enough to set the number of images of your z-stack as default and in a macro you can collect the slice information via getDimensions(width, height, channels, slices, frames)


Kees

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of José María Mateos
Sent: 29 July 2013 15:46
To: [hidden email]
Subject: Frame average plugin (4D HyperStack)

Hello everyone,

Before I rush to code it, I'd like to know if there is a plugin that does this:

I have a 4D image (3D + time) open as a HyperStack. From that 4D image, I want to create a 3D image that consists of the average of different frames (from M to N, specified by the user). I understand this (http://svg.dmi.unict.it/iplab/imagej/Plugins/Forensics/Frames%20Global%20Average/web/frameglobalaverage.htm)
does something similar to what I want, but does not ask the user for the starting and ending frames to average.

Thanks a lot,

José.

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