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Re: mrxs format whole slide images

Posted by ctrueden on Aug 13, 2013; 7:33pm
URL: http://imagej.273.s1.nabble.com/mrxs-format-whole-slide-images-tp5004412p5004417.html

Hi Isabelle,

> I obtained mrxs whole slide images of mouse kidneys with a Mirax Scan,
> viewed with Mirax Viewer. I want to use these images with ImageJ to
> make area measurements.

Lots of people want support for .mrxs, but it is not yet supported by
Bio-Formats (which is the most likely path to getting them working in
ImageJ/Fiji). See this ticket in the OME issue tracker for details:

http://trac.openmicroscopy.org.uk/ome/ticket/4121

The good news is that .mrxs will be supported eventually!

Regards,
Curtis


On Tue, Aug 13, 2013 at 11:34 AM, Isabelle Dupont <[hidden email]>wrote:

> Hello,
>
> I obtained mrxs whole slide images of mouse kidneys with a Mirax Scan,
> viewed with Mirax Viewer.
> I want to use these images with ImageJ to make area measurements.
> However, when I open these images in ImageJ, the resolution of these whole
> slide images changes to a bad quality.
> Is there a way to use these mrxs format images in Image J with the
> resolution preserved ?
>
> Thank you,
>
> Isabelle
>
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> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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