Re: segmentation

Posted by ctrueden on
URL: http://imagej.273.s1.nabble.com/segmentation-tp5004436p5004440.html

Hi Magda,

> I would like to do a segmentation of a microscopy image using ImageJ.

I agree with Jiří that the Trainable Weka Segmentation plugin is likely
your easiest path to success.

That said, if you want an overview of how segmentation typically works in
ImageJ in general, see this page:

    http://fiji.sc/Segmentation

Regards,
Curtis


On Thu, Aug 15, 2013 at 9:48 AM, Jiří Borovec <[hidden email]>wrote:

> Hello,
> maybe good choice for you could be the Weka segmentation plugin in Fiji.
> See its webpage - http://fiji.sc/Trainable_Weka_Segmentation
>
> JB
>
>
> On 15 August 2013 16:04, Jędrzejas, Magdalena <
> [hidden email]> wrote:
>
> > Hello,
> >
> > I would like to do a segmentation of a microscopy image using ImageJ. I
> > want to divide the picture into three labels: bone (originally more or
> less
> > yellow), cartilage (originally green) and connective tissue which has
> other
> > colors. Then Id like to measure these three areas. What tool/plugin
> should
> > I use? The contrast between the tissues is not so good.....
> >
> > I would really appreciate any help
> >
> > Magda
> >
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
>
>
> --
> Best regards and wishes of a nice day, Jiří Borovec
>
> ----------------------------------------------------------------------------------------------------
> Jiří Borovec                                          |  <
> [hidden email]>
> PhD student at CMP, ISC member, CTU  |       tel.: [phone]
> http://cmp.felk.cvut.cz/~borovji3             |    mobile: [phone]
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