Posted by
ctrueden on
URL: http://imagej.273.s1.nabble.com/segmentation-tp5004436p5004505.html
Hi Peter,
> After switching from 32bit to a 64bit Windows I get an error always
> when I try to run the plugin out of my IJ installation.
As Stephan says, something is missing. But it should definitely not be
necessary to download anything manually.
If you run Help > Update Fiji, then click "Advanced mode" and change the
"View Options" to "View uninstalled files only" do you see any entries
ending in ".jar"?
> java.lang.NoSuchMethodError: org.slf4j.helpers.MessageFormatter.format
Your error message suggests you are missing slf4j-api-1.5.10.jar.
If indeed you are missing that file (or other JAR files), click the
"Status/Action" and change it to "Install / Update".
If that doesn't work, you can also try downloading a fresh & up-to-date
Fiji from:
http://fiji.sc/Downloads.
Regards,
Curtis
On Tue, Aug 20, 2013 at 8:28 AM, Stephan Preibisch <
[hidden email]>wrote:
> Hi Peter,
>
> you miss something from the LOCI bioformats to open the stacks ... it is
> available for download here
http://loci.wisc.edu/bio-formats/downloads>
> Hope that helps,
> Stephan
>
> On Aug 20, 2013, at 12:25 , Peter Haub wrote:
>
> > Hi List,
> > I use the stitching plugin of S. Preibisch (Grid/Collection mode).
> > After switching from 32bit to a 64bit Windows I get an error always when
> I try to run the plugin out of my IJ installation.
> > The error message is:
> > java.lang.NoSuchMethodError:
> org.slf4j.helpers.MessageFormatter.format(Ljava/lang/String;Ljava/lang/Object;Ljava/lang/Object;)Ljava/lang/String;
> > at
> org.slf4j.impl.Log4jLoggerAdapter.debug(Log4jLoggerAdapter.java:246)
> > at loci.common.IniParser.parseINI(IniParser.java:114)
> > at loci.common.IniParser.parseINI(IniParser.java:98)
> > at loci.plugins.prefs.OptionsList.<init>(OptionsList.java:64)
> > at loci.plugins.in.ImporterOptions.<init>(ImporterOptions.java:156)
> > at
> mpicbg.stitching.ImageCollectionElement.open(ImageCollectionElement.java:81)
> > at Stitching_Grid.run(Stitching_Grid.java:342)
> > at ij.IJ.runUserPlugIn(IJ.java:185)
> > at ij.IJ.runPlugIn(IJ.java:152)
> > at ij.Executer.runCommand(Executer.java:127)
> > at ij.Executer.run(Executer.java:64)
> > at java.lang.Thread.run(Unknown Source)
> > IJ version is 1.47f7
> > Java version is 1.6.0_31(64bit) - included in the IJ installation
> > I have update the stitching plugin (from
>
http://fly.mpi-cbg.de/~preibisch/software.html#Stitching).
> > The data is ok. (I used a current FIJI installation where everything
> work as expected.)
> > Does anyone has an idea what to do?
> > Thanks,
> > Peter
> >
> > --
> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>
>
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