Those * should not be there (my fault for using the rich editor). Try this:
> Hi Ignacio,
>
> I get the same error: "Could not find the main class: *bunwarpj*.bUnwarpJ_"
>
> On Aug 21, 2013, at 12:25 AM, Ignacio Arganda-Carreras wrote:
>
> > Hello Michael,
> >
> > Can you try typing
> >
> > java -Xmx512m -cp
> ~/bin/Fiji.app/jars/ij-1.47q.jar:~/bin/Fiji.app/plugins/
> > bUnwarpJ_.jar *bunwarpj*.bUnwarpJ_ -help
> >
> > instead?
> >
> > ignacio
> >
> >
> > On Tue, Aug 20, 2013 at 6:28 PM, Michael Zeineh <
[hidden email]
> >wrote:
> >
> >> Hi,
> >>
> >> I am trying to multithread bUnwarpJ on a cluster. I am trying two
> >> approaches, and running into difficulties with both:
> >>
> >> 1. I would like to be able to run bunwarpj from within a python script.
> I
> >> can do this right now, except I cannot figure out the command for
> importing
> >> bUnwarpJ at the beginning of the script. If I simply type "import
> bunwarpj"
> >> then it can't find the module. I can't figure out where to pull it from,
> >> i.e. "from ij.plugin import bunwarpj" doesn't work. The only thing that
> >> works is actually going to the menu and running
> >> Plugins->Registration->bUnwarpJ, then running my python script. Would be
> >> great to be able to start it directly from my python script by
> importing it
> >> directly.
> >>
> >> 2. I cannot get bunwarpj to work from the UNIX command line per the
> >> description in the web page:
> >>
> >> Here is what I try on a redhat linux box:
> >> java -Xmx512m -cp
> >> ~/bin/Fiji.app/jars/ij-1.47q.jar:~/bin/Fiji.app/plugins/bUnwarpJ_.jar
> >> bUnwarpJ_ -help
> >>
> >> I get a "Could not find the main class: bUnwarpJ_. Program will exit."
> >>
> >> I played around with a lot of paths, couldn't get anything to work.
> >> bUnwarpJ works totally fine from the GUI within Fiji on this computer
> >>
> >> Thank you for any help. I wonder if these are both the same problem.
> >>
> >> Michael Zeineh
> >> --
> >> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >>
> >
> >
> >
> > --
> > Ignacio Arganda-Carreras, Ph.D.
> > Seung's lab, 46-5065
> > Department of Brain and Cognitive Sciences
> > Massachusetts Institute of Technology
> > 43 Vassar St.
> > Cambridge, MA 02139
> > USA
> >
> > Phone: (001) 617-324-3747
> > Website:
http://bioweb.cnb.csic.es/~iarganda/index_EN.html> >
> > --
> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>
> Michael Zeineh, M.D.-Ph.D.
> Assistant Professor, Dept. of Radiology
> Stanford University
> Lucas Center for Imaging, Rm. P271
> 1201 Welch Road
> Stanford CA 94305-5488
> t: 650-721-1419
> c: 650-722-2235
> f: 650-723-5795
>
[hidden email]
>
> Administrative Contact:
> Scott McIntosh
>
[hidden email]
>
>
>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>