OutOfMemoryError caused by Analyze Particles plugin

Posted by lakshmi on
URL: http://imagej.273.s1.nabble.com/OutOfMemoryError-caused-by-Analyze-Particles-plugin-tp5004546.html

Hi Admin,

I have a macro that sequentially calls a set of 9 plugins and
processes more than 3000 images.
I am using a 64 bit windows OS with 8GB RAM. The memory limit for Fiji
by default was about 6095 MB(75% of RAM).
The macro that I have written works fine for approximately 300 images
and then gives an error:- java.lang.OutOfMemoryError: Java heap space
I did a unit testing by running individual plugins separately and also
by combining the first 8 plugins together. None of these plugins when
run separately/together gave the 'outofmemory' error.
But when I included the "Analyze Particles" plugin the Fiji threw an
error immediately after 300 images. (6Gb was not sufficient for >300
images). Increasing/Decreasing the memory used by Fiji did not help in
fixing this.

I am trying to detect ellipses whose area falls within a range in the
"Analyze Particles" plugins. The output is saved to a csv file. Can
you please let me know if I need to do anything to fix this issue.

Thanks,
Lakshmi

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