http://imagej.273.s1.nabble.com/Threshold-Segmentation-in-TrakEM2-tp5004623p5004646.html
names. No deeper insight into the matter though---sorry.
> Option 1: Create a script that processes each image so that the color is picked and kept and the rest is set to black. Set the script to every image from the right-click menu.
>
> Option 2: filter your images so that the color of interest pops up. Rigth-click, then Adjust Images - Adjust image filters...
>
> Then, use the pencil tool having an AreaList selected. See the manual.
>
> What I would do: write a script to pick up the colored areas and add them to an arealist.
>
> Albert
>
> On Sep 3, 2013, at 12:35 AM, arjundayal <
[hidden email]> wrote:
>
> > Hi,
> >
> > I am using photoshop to highlight a certain region in my EM images and then
> > registering these serial images using TrakEM2. I am now trying to create a
> > 3D model of this region and am stuck on the manual segmentation step. The
> > region that I want to segment is already segmented as it is a different
> > color than the neighboring area. I would like to avoid having to redraw an
> > outline around this area and was hoping for a way of telling TrakEM2 to use
> > the obvious color difference as a way to segment the image. I have attached
> > in example image to the post. I am interested in modeling the yellow region
> > of the image without having to redraw all the outlines.
> > <
http://imagej.1557.x6.nabble.com/file/n5004623/sample.jpg>
> >
> >
> >
> > --
> > View this message in context:
http://imagej.1557.x6.nabble.com/Threshold-Segmentation-in-TrakEM2-tp5004623.html> > Sent from the ImageJ mailing list archive at Nabble.com.
> >
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