Getting stats from Trainable Weka Segmentation plugin?

Posted by Mr Patrick Fortuna on Sep 09, 2013; 5:47am
URL: http://imagej.273.s1.nabble.com/Getting-stats-from-Trainable-Weka-Segmentation-plugin-tp5004723.html

Hi ImageJ users/developers,

I'm quite new with using ImageJ (Fiji) and was wondering if anyone could help out with getting some stats?
I'm using the Trainable Weka Segmentation plugin through Fiji to train and segment an H/E stained section of a teratoma (benign tumor formed from undifferentiated stem cells).
Once I've trained the classifiers for the various classes I'm interested in, I'd be really interested in getting stats on what percentage of each classifier is present within the image I'm working with.
I've tried using the Measurement of Percent Area (as described here: http://www.nist.gov/lispix/imlab/measure/pctarea.html) although I couldn't seem to set the threshold cause I have more than one color in the segmented image (due to 5 classifiers being run at the same time).
Could anyone recommend how to get the stats of my interested classes?
Any help would be much appreciated!

Thanks and regards,
Patrick

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