ship with Fiji. The fact that it wasn't being shipped was a bug, which I
have now remedied. You should *not* have to download that file manually in
In short: I think I fixed it. Can you update your Fiji, try opening your
> Dear Crystal,
>
> In the error log I read this line:
> Caused by: loci.formats.MissingLibraryException: The JAI Image I/O Tools
> are required to read JPEG-2000 files. Please obtain jai_imageio.jar from
>
http://www.openmicroscopy.org/site/support/bio-formats/developers/java-library.html>
> You need to go to that page, download jai_imageio.jar and place it in your
> Fiji "jars" folder (not "plugins");
>
> That should fix the error
>
> On a second note, the .VSI file you annexed is only a fraction of your
> data. Each .vsi file has a folder with the same name. In your case, there
> should be a "_yay_" folder in the same location as yay.vsi
>
> The vsi file contains only the metadata and some thumbnails. The actual
> full resolution image data is on the above-mentioned folder.
>
> Hope this helps!
>
> Best
>
> Oli
>
> Olivier Burri
> Engineer - Image Processing
> & Software Development
> EPFL - SV - PTECH - PTBIOP
>
>
> -----Original Message-----
> From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of
> Crystal
> Sent: lundi 9 septembre 2013 18:36
> To:
[hidden email]
> Subject: Re: Image J - VSI Reader
>
> Dear Olivier,
>
> Thanks so much for taking the time to respond. I tried your suggestions
> but am still getting the same error. Attached is the log file and one of my
> test analysis files (ignore the file name... it was after hours of problems
> with the microscope haha).
>
> error:
> Log.txt <
http://imagej.1557.x6.nabble.com/file/n5004731/Log.txt>
>
> vsi file:
> yay.vsi <
http://imagej.1557.x6.nabble.com/file/n5004731/yay.vsi>
>
>
> Best,
> Crystal
>
> -----------------------
> Sep 03, 2013; 4:02am
> Re: Image J - VSI Reader
> Olivier Burri
> 50 posts
>
> "To fix this, move the 'icons' folder in the 'shared bars' one folder up
> (So you get "ActionBar/icons"). This should add the icons back.
>
> The "Macro Error" is most likely caused by scifio.jar missing in the "jars"
> folder (if you look at the error log that is generated, you should see a
> more 'human readable' message suggesting to get scifio.jar)
>
> You can download it here:
>
http://www.openmicroscopy.org/site/products/bio-formats/downloads>
>
> In case it is not, I suggest you activate the PTBIOP update site and make
> sure you have the latest version of the VSI Reader.
>
http://fiji.sc/How_to_follow_a_3rd_party_update_site>
> In case this does not help, feel free to send me the error log you get,
> along with a link to your VSI file and I'll help you out from here.
>
>
> The documentation will be updated as soon as possible.
>
> All the best,
>
> Oli
>
>
>
>
> --
> View this message in context:
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>
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