Re: ROIs out of 3D objects counter?

Posted by Thomas Boudier on Sep 20, 2013; 7:32am
URL: http://imagej.273.s1.nabble.com/ROIs-out-of-3D-objects-counter-tp5004866p5004869.html

Hi Anda,

You can use the 3DRoiManager, which can display Rois of 3D objects in
selected slices. I can send you macros for automation if you are interested.

http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:3d_roi_manager:start

best,

Thomas


Le 20/09/2013 01:28, Anda Cornea a écrit :

> Hello!
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> I am trying to count small bright objects included in larger less intense somewhat spherical objects.  Using the 3D Objects Counter in FIJI/Analyze I can get nice identification and counts of the larger 3D objects.  Now it would seem easy to make each of them a region of interest but I am at a loss on how to do it.  Below is an orthogonal cut through the top orange object to give an idea of how this looks.   Anyone can please help?
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> Thank you so very much!
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>
> Anda
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> Anda Cornea, Ph.D.
> Director of the Imaging and Morphology Support Core
> Oregon National Primate Research Center
> OHSU
> 503-690-5293
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> [cid:[e-mail]85E60]      [cid:[e-mail]85E60]
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> [cid:[e-mail]85E60]
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