http://imagej.273.s1.nabble.com/ROIs-out-of-3D-objects-counter-tp5004866p5004895.html
I think that this is exactly what I was looking for, thank you so much! I'll give it a try and see if I need more automation. It is so awesome that you would offer.
> Hi Anda,
>
> You can use the 3DRoiManager, which can display Rois of 3D objects in
> selected slices. I can send you macros for automation if you are interested.
>
>
http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:3d_roi_manager:start>
> best,
>
> Thomas
>
>
> Le 20/09/2013 01:28, Anda Cornea a écrit :
>> Hello!
>>
>>
>>
>> I am trying to count small bright objects included in larger less intense somewhat spherical objects. Using the 3D Objects Counter in FIJI/Analyze I can get nice identification and counts of the larger 3D objects. Now it would seem easy to make each of them a region of interest but I am at a loss on how to do it. Below is an orthogonal cut through the top orange object to give an idea of how this looks. Anyone can please help?
>>
>>
>>
>> Thank you so very much!
>>
>>
>> Anda
>>
>>
>>
>> Anda Cornea, Ph.D.
>> Director of the Imaging and Morphology Support Core
>> Oregon National Primate Research Center
>> OHSU
>> 503-690-5293
>>
>>
>>
>>
>>
>>
>> [cid:image001.png@01CEB554.BDB85E60] [cid:image002.png@01CEB554.BDB85E60]
>>
>>
>>
>>
>>
>> [cid:image003.png@01CEB554.BDB85E60]
>>
>> --
>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>
> --
> /**********************************************************/
> Thomas Boudier, MCU Université Pierre et Marie Curie,
> Modélisation Cellulaire et Imagerie Biologique (EE1),
> IFR 83, Bat B 7ème étage, porte 723, Campus Jussieu.
> Tel : 01 44 27 46 92 Fax : 01 44 27 22 91
> /*******************************************************/
>
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