http://imagej.273.s1.nabble.com/Jython-close-plugin-dialog-box-in-a-loop-tp5004943p5004949.html
> I am trying to close a dialog box when using looping through a directory.
> I
> have a Python background and therefore am using Jython. The dialog box
> appears when using the TurboReg plugin asking whether I would like to save
> the image and measurement results - I don't and just want to continue
> looping!
>
> I have tried to recreate this but am still a novice with ImageJ and Jython,
> so here is an outline (note: this snippet calls functions I have not
> posted)...
>
> from ij import IJ
> w = WindowManager
>
> # dictionary of variables
> d = {"t":target.path_to_image, "tCropRight":target.width-1,
> "tCropBottom":target.height-1, "s":source.path_to_image,
> "sCropRight":source.width-1, "sCropBottom":source.height-1}
>
> # run TurboReg dialog
> IJ.run("TurboReg ", "-align \
> -file %(s)s 0 0 %(sCropRight)s %(sCropBottom)s \
> -file %(t)s 0 0 %(tCropRight)s %(tCropBottom)s \
> -bilinear \
> 1131 847 \
> 1595 1198 \
> 1131 4636 \
> 1595 6561 \
> 6188 847 \
> 8732 1198 \
> 6188 4636 \
> 8732 6561 \
> -hideOutput" % d)
>
>
> w.setCurrentWindow(w.getWindow("Output")) # select output window
> IJ.run("Stack to Images") # stack to images
> w.setCurrentWindow(w.getWindow("Data")) # select data window
> IJ.run("16-bit") # convert to 16 bit
> IJ.saveAs("Tiff", temp_nir) # save image
> ### CLOSE DIALOG BOXES! ###
>
> Thanks
>
>
>
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