Re: Image J for MRI visualization

Posted by dscho on Oct 02, 2013; 3:02pm
URL: http://imagej.273.s1.nabble.com/Image-J-for-MRI-visualization-tp5005006p5005012.html

Hi Peter,

On Wed, 2 Oct 2013, Peter Iltis wrote:

> I have multiple high-speed MRI videos (.avi), each when opened in ImageJ
> have some 900 individual frames tracking movements of the oral cavity
> structures during brass instrument performance.  At this stage, all we
> wish to do is to be able to track certain structures over time (moving
> through the layers in the stack that is created) in terms of volume
> changes, directions of movement, distances moved etc.  Surely someone
> has developed a perfect PlugIn set or some such thing for this
> procedure.  Can somebody point me in the correct direction??

Unfortunately, MRI produces images with a wide range on the scale how easy
it is to process them. I am afraid that it is very hard to gauge without
seeing at least one example of a frame of your movie together with an
outline of your structure of interest (you would be surprised how
different a region different scientists would assume interesting in
generic biological images).

Ciao,
Johannes

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