A short question: Does anybody know how to set up the size of "Rectanglar tool"? For instance, draw a rectangular with 500x800um in a normalized picture or even pixels in the original picture (e.g. make the square with a set size but not adjust it carefully)?
> Andrew,
> I am not sure why it's loading so slow for you. Have you tried opening the
> images as a virtual stack? That may not be what you want but it will
> certainly load faster (at the cost of slower processing). Also, you might
> want to close ImageJ and try opening the stack again. I hope this helps a
> little.
>
> -Aaron
>
>
> On Wed, Oct 2, 2013 at 10:21 PM, Andrew Riching <
[hidden email]> wrote:
>
>> Apologies if this has been addressed before - I searched for my issue in
>> previous threads, but hadn't seen the specific problem I'm having anywhere.
>> I'm trying to open a fairly large file (3 GB) which is a Z series over time
>> with multiple stage locations totaling about 2800 images. I've opened these
>> routinely on a mac mini running both 10.6.8 and 10.7, with the computer
>> having 8 GB of RAM. Generally, they open in about 10 minutes.
>>
>> Right now I'm working at home on a 64 bit Windows 7 machine with an intel
>> i7
>> 3.4 GHz processor with 16 GB of RAM on a 64 bit version of FIJI, so I would
>> expect the files to open even faster, however this isn't happening. I
>> haven't gotten one to open at all yet, and I've been waiting over an hour.
>> I
>> checked the memory and threads, and it's set to use 12000 MB of memory (so
>> the 75% of the total memory that was recommended on the FIJI wiki) with 8
>> threads and the "Run garbage collector on status bar" box is checked. I
>> have
>> tried using less threads and less memory, but the results don't change. I
>> am
>> monitoring the computer's performance, and the CPU usage shifts between 12%
>> and 15% while the memory usage is between 4.00 and 4.7 GB, generally with
>> at
>> least 8GB "free."
>>
>> Is there something I'm overlooking about changing the memory allocation?
>> FIJI seems to ignore whatever I set.
>>
>> Thanks,
>> -Andrew
>>
>>
>>
>> --
>> View this message in context:
>>
http://imagej.1557.x6.nabble.com/Memory-issue-tp5005018.html>> Sent from the ImageJ mailing list archive at Nabble.com.
>>
>> --
>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>
>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html