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Re: Memory issue

Posted by J. Daniel Fenn on Oct 03, 2013; 12:03pm
URL: http://imagej.273.s1.nabble.com/Memory-issue-tp5005018p5005023.html

So I'm no programmer.  But I routinely open 6-10 GB stacks with FIJI on
my computer, so it can work.  You may want to check your hard drive
speed.  I had issues with that at one point a long time ago and needed
to replace a disk.  Probably not your issue, but maybe.

It takes me about 5 minutes to open a stack.  I'm on 64-bit linux.
ImageJ 1.48d with Java 1.6.0_24 installed.  16GB of ram, but I only
allocate 8277 to Image J with 4 threads.

I wish I could be more help.

On 10/02/2013 10:21 PM, Andrew Riching wrote:

> Apologies if this has been addressed before - I searched for my issue in
> previous threads, but hadn't seen the specific problem I'm having anywhere.
> I'm trying to open a fairly large file (3 GB) which is a Z series over time
> with multiple stage locations totaling about 2800 images. I've opened these
> routinely on a mac mini running both 10.6.8 and 10.7, with the computer
> having 8 GB of RAM. Generally, they open in about 10 minutes.
>
> Right now I'm working at home on a 64 bit Windows 7 machine with an intel i7
> 3.4 GHz processor with 16 GB of RAM on a 64 bit version of FIJI, so I would
> expect the files to open even faster, however this isn't happening. I
> haven't gotten one to open at all yet, and I've been waiting over an hour. I
> checked the memory and threads, and it's set to use 12000 MB of memory (so
> the 75% of the total memory that was recommended on the FIJI wiki) with 8
> threads and the "Run garbage collector on status bar" box is checked. I have
> tried using less threads and less memory, but the results don't change. I am
> monitoring the computer's performance, and the CPU usage shifts between 12%
> and 15% while the memory usage is between 4.00 and 4.7 GB, generally with at
> least 8GB "free."
>
> Is there something I'm overlooking about changing the memory allocation?
> FIJI seems to ignore whatever I set.
>
> Thanks,
> -Andrew
>
>
>
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>
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