Re: .lif files on Imagej error

Posted by Melissa Linkert-2 on Oct 28, 2013; 5:28pm
URL: http://imagej.273.s1.nabble.com/lif-files-on-Imagej-error-tp5005346p5005355.html

Hi Fabio,

> Hello, I downloaded to my pc a .lif file from a Leika microscope.
> The I downloaded the plugin LOCI, moved the file in the Imagej plugin
> folder, restart Imagej and open the file.
> This is the error that I receive:
> ImageJ 1.48e; Java 1.6.0_20 [64-bit]; Windows 7 6.1; 42MB of 3500MB (1%)

Which version of Bio-Formats are you using?  "Help > About Plugins >
LOCI Plugins" should tell you; if the version number is something other
than 4.4.9, then I would recommend trying the 4.4.9 version from here:

http://downloads.openmicroscopy.org/bio-formats/4.4.9/

If you see that error with the 4.4.9 version, then it would be helpful
if you could send a file that shows the problem.  If needed, feel free to upload
the file to:

http://qa.openmicroscopy.org.uk/qa/upload/

Regards,
-Melissa

On Mon, Oct 28, 2013 at 07:39:23AM -0700, Lebistes wrote:

> Hello, I downloaded to my pc a .lif file from a Leika microscope.
> The I downloaded the plugin LOCI, moved the file in the Imagej plugin
> folder, restart Imagej and open the file.
> This is the error that I receive:
> ImageJ 1.48e; Java 1.6.0_20 [64-bit]; Windows 7 6.1; 42MB of 3500MB (1%)
>  
> java.lang.IllegalArgumentException: 0 must not be null and positive.
>         at
> ome.xml.model.primitives.PositiveInteger.<init>(PositiveInteger.java:56)
>         at loci.formats.in.LIFReader.initMetadata(LIFReader.java:566)
>         at loci.formats.in.LIFReader.initFile(LIFReader.java:446)
>         at loci.formats.FormatReader.setId(FormatReader.java:1244)
>         at
> loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:482)
>         at loci.plugins.in.ImportProcess.execute(ImportProcess.java:146)
>         at loci.plugins.in.Importer.showDialogs(Importer.java:141)
>         at loci.plugins.in.Importer.run(Importer.java:79)
>         at loci.plugins.LociImporter.run(LociImporter.java:81)
>         at ij.IJ.runUserPlugIn(IJ.java:196)
>         at ij.IJ.runPlugIn(IJ.java:160)
>         at ij.IJ.runPlugIn(IJ.java:149)
>         at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:258)
>         at HandleExtraFileTypes.run(HandleExtraFileTypes.java:37)
>         at ij.IJ.runUserPlugIn(IJ.java:196)
>         at ij.IJ.runPlugIn(IJ.java:160)
>         at ij.IJ.runPlugIn(IJ.java:149)
>         at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:453)
>         at ij.io.Opener.openImage(Opener.java:310)
>         at ij.io.Opener.openImage(Opener.java:333)
>         at ij.io.Opener.open(Opener.java:143)
>         at ij.io.Opener.openAndAddToRecent(Opener.java:246)
>         at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:176)
>         at ij.plugin.DragAndDrop.run(DragAndDrop.java:152)
>         at java.lang.Thread.run(Thread.java:619)
>
> May you help me to solve the problem?
> Thanks
>
> Fabio Valenti
>
>
>
> --
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>
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