Re: Install plugin with dependencies in Fiji

Posted by lechristophe on Nov 20, 2013; 9:46pm
URL: http://imagej.273.s1.nabble.com/Install-plugin-with-dependencies-in-Fiji-tp5005607p5005624.html

Hi Johannes,

I am aware that you are at a Hackaton from your Twitter feed and previous
emails to the list. I took care of not suggesting any urgency in my email,
I was just asking if it could be beneficial to update the currently used
common maths in Fiji for the GSDC plugins (which are not mine) and
potentially others at some point in the future.

Thanks for the help,

Christophe


On Wed, Nov 20, 2013 at 7:13 PM, Johannes Schindelin <
[hidden email]> wrote:

> Hi,
>
> On Tue, 19 Nov 2013, Christophe Leterrier wrote:
>
> > I was able to install the SMLM part of the GFSC plugins, the part that
> > interests me and that depends only on 3 jars:
> >
> > commons-math3-3.1.1.jar
> > ejml-0.23.jar
> > xstream-1.4.4.jar
> >
> > I added the xstream and ejml jars in the Fiji jars folder, but the
> plugins
> > didn't run with the stock Fiji common-math.jar (no version number).
> > Replacing the common-math.jar by the GCSD commons-math3-3.1.1.jar in
> Fiji,
> > I got the plugins to run.
>
> You should be able to "shadow" commons-math on your plugin site, then.
> Just rename it so the name is commons-math-3.1.1.jar and remove
> commons-math-3.0-SNAPSHOT.jar. The updater should then offer you the
> option to shadow that file via your update site.
>
> Please note that I am not really available for assistance this week, as I
> have some "real" work to do for a change ;-)
>
> Ciao,
> Johannes
>

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