Posted by
Stephan Preibisch on
Dec 01, 2013; 1:44pm
URL: http://imagej.273.s1.nabble.com/Standalone-ImgLib2-usage-tp5005746p5005747.html
Hi Rex,
ImgLib2 can be developed and run independent of Fiji. The easiest way is to
1) check out the ImgLib2 repository using GIT
https://github.com/imagej/imglib2) Install & Run Eclipse
3) File > Import > Existing Maven Project (then select the directory and choose all the poms that you want, for example all of them)
You are good to go, now add these projects as dependency of your project.
To get started, try the examples:
http://fiji.sc/ImgLib2_ExamplesYou also find them in the submodule (ImgLib2-examples)
Hope this helps,
Stephan
---
Dr. Stephan Preibisch
HFSP Fellow
Eugene Myers lab / Robert H. Singer
MPI-CBG / Albert Einstein College of Medicine / HHMI Janelia Farm
email:
[hidden email] /
[hidden email] /
[hidden email]
web:
http://www.preibisch.net/On Dec 1, 2013, at 14:23 , Rex Kerr wrote:
> I've been attempting to use ImgLib2 in a quasi-standalone fashion to
> automate some image processing tasks. So far this has been an exercise in
> frustration due to a combination of underdocumented dependency on other
> libraries for critical functionality (ImageJ/Fiji, SCIFIO, etc.) and lack
> of documentation of ImgLib2 itself.
>
> This has been so difficult thus far that I have to wonder if I'm missing
> some key resource. Before I ask specific questions: what is it that I was
> supposed to do? Or is ImgLib2 not intended to be used apart from Fiji etc.
> (and a good working knowledge of what ImageJ can do and how it does it)?
>
> --Rex
>
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