Re: align and contatenate two stacks

Posted by Xuefeng Liu on Jan 06, 2014; 7:01pm
URL: http://imagej.273.s1.nabble.com/Re-align-and-contatenate-two-stacks-tp5006043.html

Hi, I took two stack images from two physically consecutive brain slices,
and I would like to align the two stacks and concatenate them into a new
stack images. What plugins should I use?
    I imagine the easiest algorithm is to align the last image of the first
stack to the first image of the second stack (like Align Image by ling ROI)
, and align one stack to the other using such offset information, but I
just don't know if such a plugin exists to tackle this problem.
     As an example, I uploaded two stacks ( stack 1 and stack 2, only two
sections for each stack as an example, sorry about the small size due to
email limit and hope attachment could go through.), so my aim is to align
and concatenate the two stacks.

Thanks for your help.


On Mon, Jan 6, 2014 at 12:28 PM, Xuefeng Liu <[hidden email]> wrote:

> Hi, I took two stack images from two physically consecutive brain slices,
> and I would like to align the two stacks and concatenate them into a new
> stack images. What plugins should I use?
>     I imagine the easiest algorithm is to align the last image of the
> first stack to the first image of the second stack (like Align Image by
> ling ROI) , and align one stack to the other using such offset information,
> but I just don't know if such a plugin exists to tackle this problem.
>      As an example, I uploaded two stacks ( stack 1 and stack 2, only two
> sections for each stack as an example, hope attachment could go through.),
> so my aim is to align and concatenate the two stacks.
>
> Thanks for your help.
>
> Xuefeng
>

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