Re: Count amount of detected ROIs inside a ROI

Posted by harkonsen on Jan 21, 2014; 4:45pm
URL: http://imagej.273.s1.nabble.com/Count-amount-of-detected-ROIs-inside-a-ROI-tp5006183p5006205.html

ok here i found something that almost does the trick:

http://microscopy.duke.edu/HOWTO/countfoci.html

but as i have plenty of pictures I would need a macro, something like this:

--> at first I ROI my cells and afterwards I use the find maxima function within the same channel, but It doesnt redirect to the find maxima output picture:

run("Find Maxima...", "noise=50 output=[Single Points]");
selectWindow("ImageX.lsm");
roiManager("Show All");
roiManager("Measure");

please help me