Posted by
Cammer, Michael on
Jan 24, 2014; 11:21pm
URL: http://imagej.273.s1.nabble.com/combining-montaging-stacks-tp5006125p5006271.html
Hi.
I solved the problem. May not be elegant, but it works. If interested, result is here:
http://cammer.net/notes/imagej/tilestacks/index.htmlThanks all who replied!
===========================================================================
Michael Cammer, Microscopy Core & Dustin Lab , Skirball Institute, NYU Langone Medical Center
Cell: 914-309-3270 Lab: 212-263-3208
http://ocs.med.nyu.edu/microscopy &
http://www.med.nyu.edu/skirball-lab/dustinlab/-----Original Message-----
From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of Burri Olivier
Sent: Friday, January 17, 2014 8:28 AM
To:
[hidden email]
Subject: Re: combining/montaging stacks?
Dear Michael,
If I understand correctly, you have 10 to 36 stacks of images that are 100x100x36
What you want to do is:
1. Montage each of these small stacks
2. Make a stack of the montaged images
If this is correct, then a very simple macro would be
run("Make Montage...", 'OPTIONS HERE'); // You can check with the macro recorder what options you need. Just make sure that at the end of the montage, you give it an easy name rename("Montage of Stack "+stackNumber);
Then you can use
run("Images to Stack", "name=[My New Stack of Montages] title=[Montage of Stack] use"); Which will only take the images that have "Montage of Stack" in the title.
Then you'll get a stack of all the montages. Seeing as all the images are the same size in XYZ, the montage should also be identical for each slice of your new stack..
Hope I got it.
Best
Oli
Olivier Burri
Engineer - Image Processing
& Software Development
EPFL - SV - PTECH - PTBIOP
> -----Original Message-----
> From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of
> Cammer, Michael
> Sent: mardi 14 janvier 2014 23:35
> To:
[hidden email]
> Subject: combining/montaging stacks?
>
> We have between 10 and 36 stacks of about 100 X 100 X 36 pixels each in XY
> that we want to combine together into one stack. Essentially, the result
> would be a montage of stacks.
>
> Has anyone written a macro or plugin for this that they'd be willing to share?
> Otherwise I'll write a macro.
>
> Please see
http://www.flickr.com/photos/mcammer/11954287235/ for a
> case where we're want to montage as 6 X 4.
>
> Thanks!
>
> ==========================================================
> =================
> Michael Cammer, Microscopy Core & Dustin Lab , Skirball Institute, NYU
> Langone Medical Center
> Cell: 914-309-3270 Lab: 212-263-3208
>
http://ocs.med.nyu.edu/microscopy &
http://www.med.nyu.edu/skirball-> lab/dustinlab/
>
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