Re: cell projections cuantification?

Posted by Adam Hughes on Feb 10, 2014; 5:41pm
URL: http://imagej.273.s1.nabble.com/cell-projections-cuantification-tp5006468p5006476.html

If there's not a tool specific to this task, it seems like trainable
segmentation might be the first step; at least to separate the extensions
from the core cell.

http://www.youtube.com/watch?v=8yfBHiGufFE


On Mon, Feb 10, 2014 at 3:46 AM, Courtand Gilles <
[hidden email]> wrote:

> hi,
> could you share some images to make me an idea, I wrote a macro to analyze
> mitochondria (number, length) using different plugins (tubeness,
> squeletonize..) wich could do the trick
>
> regards
>
> Gilles COURTAND
> Institut de Neurosciences Cognitives et Intégratives d'Aquitaine
> UMR 5287 CNRS-Université de Bordeaux
> Bat B2
> Avenue des facultés 33405 Talence France
> tel: [phone]
> fax: [phone]
> http://www.incia.u-bordeaux1.fr/
>
> Le 09/02/2014 22:42, Guadalupe a écrit :
>
>  Good afternoon,
>>
>> I am trying to count cell projections (like filopodia extensions) and I
>> was
>> wondering if anyone is aware of an automated way to do it with ImageJ? I
>> would need to know number and length of all the extensions from the cells.
>>
>> Thank you very much
>>
>> Guadalupe
>>
>>
>>
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