Posted by
CARL Philippe (LBP) on
URL: http://imagej.273.s1.nabble.com/Radial-profile-ext-to-work-with-Macros-tp5005598p5006486.html
Hi again,
I guess by having "the option to output the plot as intensity vs time rather
than an individual plot at each time point" you probably wanted something
similar to what can now be done with the following macro, isn't it?:
run("Radial Profile Angle", "x_center=200 y_center=200 radius=200
starting_angle=0 integration_angle=180 use_spatial_calibration
calculate_radial_profile_on_stack");
run("Clear Results");
for(i = 0; i != Ext.getStackSize; i++)
{
setResult("Time", i, i);
for(j = 0; j != Ext.getBinSize; j++)
setResult(Ext.getXValue(j), i, Ext.getYValue(i, j));
}
updateResults();
My best regards,
Philippe
-----Message d'origine-----
De : ImageJ Interest Group [mailto:
[hidden email]] De la part de
Philippe CARL Envoyé : mardi 11 février 2014 13:34 À :
[hidden email]
Objet : Re: Radial profile ext to work with Macros
Dear James,
I'm happy that you like the work that has been implemented in the new
version of the radial-profile-ext plugin.
Following your request, please download an even newer version (from this
morning) under the following link:
http://punias.free.fr/Radial_Profile_Angle_Ext.jarIn this version I have now added MacroExtension features which are
illustrated in the following macro:
run("Radial Profile Angle", "x_center=200 y_center=200 radius=200
starting_angle=0 integration_angle=180 use_spatial_calibration");
print(Ext.getBinSize);
print(Ext.getStackSize);
print(Ext.getXValue(0)); // XValue
[Ext.getBinSize]
print(Ext.getYValue(0, 0)); //
YValue[Ext.getStackSize][Ext.getBinSize]
Is this newer version completely answering your issue or do you need
additional methods?
In the case you validate this version I will then ask Wayne to make a new
update on the ImageJ Website.
My best regards,
Philippe
-----Message d'origine-----
De : ImageJ Interest Group [mailto:
[hidden email]] De la part de JimmiB
Envoyé : mardi 11 février 2014 01:15 À :
[hidden email] Objet : Re:
Radial profile ext to work with Macros
Dear Philippe,
Thanks for the update to radial-profile-ext. I came across your earlier
version several years ago, but was unable to employ it as desired due to the
lack of macro compatibility. I have tested the new version in a few basic
macros and it is great.
As a suggestion, for time/stack measurements, it would be nice to have the
option to output the plot as intensity vs time rather than an individual
plot at each time point. eg.
+++-
+++<
http://imagej.1557.x6.nabble.com/file/n5006479/Radial_Plot_IvT.jpg>
vs
<
http://imagej.1557.x6.nabble.com/file/n5006479/Profile_Plot_Fvt.png>
Secondly, I can't work out how to access the data through a macro. Any
suggestions here?
What I am trying to develop is a macro that will take a list of co-ordinates
and measure the radial profile at each given point outputting the data to a
single updated results file.
Cheers,
James
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