Re: Allignement of images using correlate (FD math)

Posted by Philippe GENDRE on Feb 22, 2014; 10:38am
URL: http://imagej.273.s1.nabble.com/Allignement-of-images-using-correlate-FD-math-tp5006622p5006629.html

Dear Stephan and the whole List,

Thank for your answer Stephan.

I am not looking for a plugin to do that but efficient information
according to write the lines in my own code (for different reasons).

For example I found this :
http://www.u-bordeaux1.fr/crazybiocomputing/docs/tbs225/cours_5.pdf for
translation correction (see page 8-10) which helps me a lot.

But how to correct for rotation or tilt mismatch ?

Best regards,

Philippe


2014-02-22 0:15 GMT+01:00 Stephan Saalfeld <[hidden email]>:

> You cannot.  Check the plugins
>
> http://fiji.sc/StackReg
>
> http://fiji.sc/Linear_Stack_Alignment_with_SIFT
>
> http://fiji.sc/Register_Virtual_Stack_Slices
>
> http://fiji.sc/BUnwarpJ
>
> or
>
> http://fiji.sc/TrakEM2
>
> Cheers,
> Stephan
>
>
>
>
>
>
>
> On Fri, 2014-02-21 at 22:52 +0100, Philippe GENDRE wrote:
> > Dear List,
> >
> > I am currently using FD math --> Correlate to allign a set of images
> from a
> > reference.
> >
> > I am using the position of the maximum in the "result" image according to
> > apply a translation operation on the set of images.
> >
> > Hqw to correct my set of images from rotation or tilt using the
> information
> > in the "result" image ?
> >
> > Best regards,
> >
> > Philippe
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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