Re: Fiji gets stuck at Trainable Weka Segmentation

Posted by Xiaoxiong Xing on Mar 26, 2014; 4:38pm
URL: http://imagej.273.s1.nabble.com/Fiji-gets-stuck-at-Trainable-Weka-Segmentation-tp5007076p5007090.html

Dear Ignacio,

I am running Scientific Linux 6.0, 64 bit version. The data is composed of
738 slices of 738*738 8 bit images, in total about 400 MB, but I am using a
high performance machine which contains 16 CPUs and 128 GB memory, so it
shouldn't be the problem.

Today I found that Fiji Weka plugin got stuck if it tried to process a
black image and if I removed the black images, it then can move forward. I
am not sure if it's a bug of the plugin.

Thanks a lot.
Xiaoxiong


2014-03-26 3:41 GMT-06:00 Ignacio Arganda-Carreras <
[hidden email]>:

> Dear Xiaoxiong,
>
> Can you tell us more about the problem? What is the size of the image
> you're using? Your system (Linux, Mac, Windows)? 32 or 64 bit? Your RAM?
>
> Thanks!
>
> ignacio
>
>
> On Tue, Mar 25, 2014 at 8:18 PM, Xiaoxiong Xing <[hidden email]
> >wrote:
>
> > Dear users,
> >
> > My Fiji sometimes gets stuck at "*Filtering feature stack by selected
> > attributes...*" when I try to apply a classifier to a new image or an
> image
> > stack. However, the same operation sometimes works fine, which makes me
> > fill weird.
> >
> > Are there anyone have the same problem?
> >
> > Sincerely,
> > Xiaoxiong
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
>
>
> --
> Ignacio Arganda-Carreras, Ph.D.
> Seung's lab, 46-5065
> Department of Brain and Cognitive Sciences
> Massachusetts Institute of Technology
> 43 Vassar St.
> Cambridge, MA 02139
> USA
>
> Phone: [phone]
> Website: http://bioweb.cnb.csic.es/~iarganda/index_EN.html
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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