Re: Problem using stitching plugin

Posted by Mark Hiner-2 on Apr 09, 2014; 12:43pm
URL: http://imagej.273.s1.nabble.com/Problem-using-stitching-plugin-tp5007254p5007258.html

Hi Eric,

 Because the wildcards for image indices ({x} and {y}) are present in your
output, it looks like they were not processed by the type of
grid/collection stitching you were running.

 I am assuming you looked at this fiji wiki entry
<http://fiji.sc/Stitching>for example syntax, which only mentions
using {x} and {y}. However, the
wildcards you can use actually depends on which type of grid/collection
stitching you choose.

 For the various "Grid: ..." entries, you can only have one {i} wildcard
position.
 For "Filename defined position", you can have an {x} and {y}.. so I'm
assuming this is what you want to use.

If you were using "Filename defined position" and got that error, it's
definitely a bug and please let us know.

In the mean time I will edit that wiki page to more fully explain when to
use each wildcard.

Thanks!
Mark


On Wed, Apr 9, 2014 at 5:28 AM, Stephan Preibisch <[hidden email]>wrote:

> Hi Eric,
>
> did you choose the right type of grid/collection? And the right
> parameters, which ones did you use, how are all the files called? Also can
> you provide the precise error, exception and log as shown by the plugin?
> Without this information it is really hard for me to say anything ...
>
> Cheers, Stephan
>
> On Apr 9, 2014 7:31 PM, Eric Leroy <[hidden email]> wrote:
> >
> > Hi,
> >
> > I am trying to use the Grid/Collection stitching plugin. My images are
> > called i
>
> mage-1-1.tif, image-1-2.tif and so on. I defined as pattern for > the file
> names for tiles the string image-{x}-{y}.tif and I have an error > message
> saying that it can not load the file image-{x}-{y}.tif. Can you > tell me
> where is the problem, I searched in the Fiji website but I didn't > found
> documentation for the syntax that should be used. > Thank you for your help
> > > Regards, > -- > Eric Leroy > Responsable de la plateforme microscopie
> électronique > Institut de Chimie et des Matériaux Paris Est > UMR 7182 -
> CNRS - UPEC > 2/8, rue Henri Dunant > 94320 THIAIS > Tel : [phone]
> 09 > Fax : [phone] > > -- > ImageJ mailing list:
> http://imagej.nih.gov/ij/list.html
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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