http://imagej.273.s1.nabble.com/run-Bio-Formats-importer-from-command-line-tp5007445p5007452.html
Thanks a lot. Any chance I can run with command line, but without any macro
file involved? I prefer not to create an additional macro. Just command
line. Thanks.
> Hi Nick,
>
> > I am wondering how I can run Bio-Formats importer from command line?
>
> 1) Use the Macro Recorder [1] to record the line of macro code that runs
> Bio-Formats that way you want.
>
> 2) Click "Create" to pop up the Script Editor [2], edit as desired, then
> save the macro as a .ijm macro file.
>
> 3) Run the macro from the command line:
>
> ImageJ-win32.exe -macro myMacro.ijm -batch
>
> Leave off the "-batch" flag if you want Fiji to remain open afterward.
>
> Note that you cannot use the "--headless" option [3] because Bio-Formats
> does not work in headless mode, even when running as a macro. (You will see
> "VerifyError" on the console if you try.)
>
> I have added this information to the Bio-Formats wiki page:
>
http://fiji.sc/Bio-Formats#Calling_Bio-Formats_from_the_command_line>
> Regards,
> Curtis
>
> [1]
http://fiji.sc/Introduction_into_Macro_Programming#The_recorder> [2]
http://fiji.sc/Script_Editor> [3]
http://fiji.sc/Headless#Running_macros_in_headless_mode>
>
> On Fri, Apr 25, 2014 at 3:24 PM, Nick X. Tsui <
[hidden email]> wrote:
>
> > Dear ImageJ fellows:
> > Thanks for reading my questions.
> > I am wondering how I can run Bio-Formats importer from command line?
> > Suppose I know what image I want to load, and no need to pop the
> > Bio-Formats importer window.
> > something like this?
> >
> > imagej.exe myImage.tif -run ""Bio-Formats..., Bio-Formats importer" ?
> >
> > Thanks a lot.
> > Best regards,
> > Nick
> >
> > --
> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >
>
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