3D objects counter

Posted by PEARSON Matthew on Apr 28, 2014; 9:37pm
URL: http://imagej.273.s1.nabble.com/3D-objects-counter-tp5007478.html

Hi all,

I'm using the 3D objects counter plugin within a macro but i'd like it to only threshold and measure objects within a defined region of interest as i'd like to narrow down the number of measured objects and i'm only interested in a couple of spots in the image.  If i place a selection on the image though it still auto thresholds and measures the entire image and ignores the selection.  I can deal with the threshold but it would be useful if there was a way for it to only measure the objects found in the ROI?

One option would be to duplicate only the area of the image covered by the selection then run 3D object counter but i'd like to avoid the complications of lots of duplicate windows.

Thanks for the help,

Matt
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