Re: ImageJ shows corrupted image on tiff

Posted by Mark Hiner-2 on Apr 29, 2014; 8:19pm
URL: http://imagej.273.s1.nabble.com/ImageJ-shows-corrupted-image-on-tiff-tp5007482p5007496.html

Herbie,

 Not sure why we have different results. The only thing that seems
different is the Java version, but I don't see how that would matter here,
since we just confirmed it was a problem with interpreting the FillOrder
tag. You don't have any other plugins installed that may be being used for
opening this file? Did you try with a fresh ImageJ or Fiji?

 Yaniv - Curtis Rueden just added FillOrder
handling<https://github.com/scifio/scifio/commit/fedcfa5785b0895e6fa38712e86d1f334a7c4706>to
SCIFIO and your file now opens perfectly (see this
screenshot <http://hinerm.imagej.net/screenshot.png>).

 I'll let you know when this is uploaded to Fiji so you can update and get
the fix!

 Thanks again for reporting this and making SCIFIO/Fiji better :)

- Mark


On Tue, Apr 29, 2014 at 2:08 PM, Herbie <[hidden email]> wrote:

> Mark,
>
> as mentioned in my most recent post the 32bit-version of ImageJ I'm using
> is 1.48v (Java 1.5.0_19) on a Mac PowerPC G4 running OSX 10.4.11.
>
> The very image opens correctly in ImageJ either by using "File>Open" or by
> dragging it onto the ImageJ-Icon or its Tool-bar. It shows properly in my
> browser (TenFourFox 24.4.0) and in Photoshop version 10.0.1.
>
> Best
>
> Herbie
>
> ::::::::::::::::::::::::::::::::::::
>
> On 29.04.14 20:57, Mark Hiner wrote:
>
>> Yaniv,
>>
>>   Once it will be fixed as you mentioned, how do I get the fix? Is it a
>> new
>>
>>> version of ImageJ?
>>>
>>>
>> The fix will be in Fiji <http://fiji.sc/Fiji>, and once it's available
>> it's
>>
>> just a matter of running "Help>Update Fiji" to get the latest libraries.
>>
>> the image you've linked in your original post was definitely not the
>>
>>> corrupted one and it opens perfectly in ImageJ -- confusing.
>>>
>>>
>> Herbie - what version of ImageJ were you using, and were you just using
>> File>Open? I downloaded a fresh 1.48v on OSX and definitely saw the same
>> pixel inversion.. it definitely did not open perfectly for me in my
>> ImageJ,
>> or Fiji.
>>
>> Also, technically, I would not call the data corrupted.. if I understand
>> the flag correctly, all the pixel values are correct, the reader just
>> isn't
>> accounting for their reversed order.
>>
>> - Mark
>>
>>
>> On Tue, Apr 29, 2014 at 1:41 PM, ImageJUser100 <[hidden email]>
>> wrote:
>>
>>  Are you saying you downloaded the image from
>>> https://copy.com/RpBz0qS3RToD
>>> ,
>>> opened it on ImageJ and it displayed properly?
>>>
>>> I tried the same file on several Windows systems with ImageJ 1.48 and all
>>> of
>>> them showed the corrupted image I posted on the last post.
>>>
>>> Yaniv
>>>
>>>
>>>
>>> --
>>> View this message in context:
>>> http://imagej.1557.x6.nabble.com/ImageJ-shows-corrupted-image-on-tiff-
>>> tp5007482p5007491.html
>>> Sent from the ImageJ mailing list archive at Nabble.com.
>>>
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>>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>>
>>>
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>>
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