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Re: problem with today's release?

Posted by ctrueden on May 08, 2014; 2:55pm
URL: http://imagej.273.s1.nabble.com/problem-with-today-s-release-tp5007629p5007633.html

Hi all,

> I just accepted the latest update and am now having difficulties with
> locally written plugins.

I uploaded the fix; run Help > Update Fiji to get it. Please reply back if
you notice continued problems.

Regards,
Curtis


On Thu, May 8, 2014 at 8:51 AM, Douglas Richardson
<[hidden email]>wrote:

> Here's a quick fix I received from Johannes this morning:
>
> Johannes Schindelin <[hidden email]> changed bug
> 742<http://fiji.sc/bugzilla/show_bug.cgi?id=742>
>  What Removed Added  CC   [hidden email]
>
>  *Comment # 1 <http://fiji.sc/bugzilla/show_bug.cgi?id=742#c1> on bug 742
> <http://fiji.sc/bugzilla/show_bug.cgi?id=742> from Johannes Schindelin
> <[hidden email]> *
>
> This is caused by some version skew. To work around until the time when I
> can
> fix it (I am transiting all day, so I cannot do it today), please
> downloadhttps://
> oss.sonatype.org/service/local/artifact/maven/redirect?r=releases&g=org.scijava&a=scijava-common&v=2.18.1&e=jar
> into your Fiji.app/jars/ directory and delete the scijava-common-2.9.0.jar
> that
> is there already.
>
> Sorry for the inconvenience.
>
>
>
>
> On Thu, May 8, 2014 at 9:26 AM, Kenneth Sloan <[hidden email]
> >wrote:
>
> > I just accepted the latest update and am now having difficulties with
> > locally written
> > plugins.  Here’s an example of the exception I get when trying to either
> > run an installed
> > plugin or “compile-and-run” from source.
> >
> > (Fiji Is Just) ImageJ 1.48v; Java 1.6.0_65 [64-bit]; Mac OS X 10.9.2;
> 46MB
> > of 4783MB (<1%)
> >
> > java.lang.NoClassDefFoundError: org/scijava/util/LineOutputStream
> >         at java.lang.ClassLoader.defineClass1(Native Method)
> >         at java.lang.ClassLoader.defineClassCond(ClassLoader.java:637)
> >         at java.lang.ClassLoader.defineClass(ClassLoader.java:621)
> >         at
> > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
> >         at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
> >         at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
> >         at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
> >         at java.security.AccessController.doPrivileged(Native Method)
> >         at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
> >         at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
> >         at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
> >         at
> > fiji.scripting.java.PlugInExecutor.<init>(PlugInExecutor.java:55)
> >         at
> > fiji.scripting.java.PlugInExecutor.<init>(PlugInExecutor.java:50)
> >         at
> >
> fiji.scripting.java.Refresh_Javas.runOutOfTreePlugin(Refresh_Javas.java:435)
> >         at
> > fiji.scripting.java.Refresh_Javas.compileAndRun(Refresh_Javas.java:122)
> >         at
> > fiji.scripting.java.Refresh_Javas.runScript(Refresh_Javas.java:71)
> >         at common.RefreshScripts.run(RefreshScripts.java:287)
> >         at fiji.scripting.java.Refresh_Javas.run(Refresh_Javas.java:61)
> >         at ij.IJ.runUserPlugIn(IJ.java:199)
> >         at ij.IJ.runPlugIn(IJ.java:163)
> >         at ij.IJ.runPlugIn(IJ.java:152)
> >         at fiji.Compile_and_Run.run(Compile_and_Run.java:25)
> >         at ij.IJ.runUserPlugIn(IJ.java:199)
> >         at ij.IJ.runPlugIn(IJ.java:163)
> >         at ij.Executer.runCommand(Executer.java:131)
> >         at ij.Executer.run(Executer.java:64)
> >         at java.lang.Thread.run(Thread.java:695)
> > Caused by: java.lang.ClassNotFoundException:
> > org.scijava.util.LineOutputStream
> >         at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
> >         at java.security.AccessController.doPrivileged(Native Method)
> >         at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
> >         at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
> >         at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
> >         ... 27 more
> >
> > --
> > Kenneth Sloan
> > [hidden email]
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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