DNA damage foci detection by 'Focipicker 3d plugin'

Posted by pavanbn on
URL: http://imagej.273.s1.nabble.com/DNA-damage-foci-detection-by-Focipicker-3d-plugin-tp5007853.html


Hello,

I am trying to count the number of h2ax foci in the nuclei of cells. I tried to use the ''foci picker 3d plugin'' it works fine, but it calculates the foci of all cells in my image. I need to count foci per cell, so how can I do it??

I tried selecting a single cell by 'Rectangle tool' and then running the plugin, but it still calculates for the all the cells.. any ideas??

Thanks,
Pavan