Posted by
ctrueden on
May 27, 2014; 3:36am
URL: http://imagej.273.s1.nabble.com/Apparent-Bio-formats-error-tp5007899p5007941.html
Hi Joel,
> The system is not frozen, but there is no progress either.
If you run ImageJ from the Command Prompt with "ImageJ-win64.exe --console"
(IIRC), you can then press Ctrl+Pause at any time to get a stack trace.
This may shed light on how the file import is hanging.
Your error message didn't come through. The space after your #2 list item
is just blank.
> We've tried to return to the earlier versions of Bioformats, but that
> doesn't work either.
Doesn't work how? Same error? Different error?
You might want to send this bug report to the OME mailing list [1].
Regards,
Curtis
[1]
https://www.openmicroscopy.org/site/support/bio-formats5/about/bug-reporting.htmlOn Fri, May 23, 2014 at 10:50 PM, JOEL B. SHEFFIELD <
[hidden email]> wrote:
> THis may have come up before, but... We are still working with the Leica
> .lei file system, in which the individual images are stored as simple tifs,
> and there is an extensive .lei file that defines the characteristics of the
> confocal series. We have discovered that although we can easily open files
> with my old 32-bit PC, we get two kinds of error with a 64-bit pc. Both
> are running Win7. The error takes the following form:
> Either.
>
> 1.after the opening screen, there is a message like "reading header" in the
> ImageJ menu, and then nothing happens. The system is not frozen, but there
> is no progress either.
>
> 2. Sometimes, we also get the following error message
>
>
>
> We've tried to return to the earlier versions of Bioformats, but that
> doesn't work either. Any ideas of what might be going wrong?
>
>
> Joel B. Sheffield, Ph.D
> Department of Biology
> Temple University
> Philadelphia, PA 19122
> Voice: 215 204 8839
> e-mail:
[hidden email]
> URL:
http://astro.temple.edu/~jbs>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>
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