Re: Problem with calibration info (EXIF data) when opening files

Posted by Mark Hiner-2 on Jun 10, 2014; 12:23pm
URL: http://imagej.273.s1.nabble.com/Problem-with-calibration-info-EXIF-data-when-opening-files-tp5008025p5008109.html

Hi Gerald,

 Can you use the "Help > Upload Sample Image" command in Fiji to upload
your dataset? I need to do more in-depth debugging to see if it's a problem
with reading the metadata of your image, or in reporting the calibration
values.

Thank you!
- Mark


On Tue, Jun 10, 2014 at 1:47 AM, Gerald Ruiner Torgersen <
[hidden email]> wrote:

> Hi Mark,
>
> thank you for explaining. I have now tried the updated version, and there
> is still an issue: My images calibrated in mm are now showing up in µm.
> The µm are not scaled, but an image 30 x 40 mm is now showing as 30 x 40
> µm.
>
> When I turn off SCIFIO the are shown with correct unit of length (mm).
>
>
> Mvh
> Gerald R. Torgersen
>
> >-----Original Message-----
> >From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
> >Mark Hiner
> >Sent: Friday, June 06, 2014 5:11 PM
> >To: [hidden email]
> >Subject: Re: Problem with calibration info (EXIF data) when opening files
> >
> >Hi Gerald,
> >
> >Sorry for the confusion - this is the change
> ><https://github.com/scifio/scifio/commit/45c1f0e6cc68492a3604c93bfbc196b
> >e9bb49698>
> >fixing calibration in SCIFIO (and there is a corresponding change
> ><https://github.com/imagej/imagej-
> >legacy/commit/9176fd86289fe83c6efab355ed04674b334d6718>
> >in imagej-legacy). These changes were complete but un-released as of last
> >night/this morning. By default, we only update Fiji with released code.
> >
> >Johannes asked you to test with our development code (and thus the
> >"SNAPSHOT" in the .jar name) but I should have just released the changes
> >when they were ready and uploaded them to Fiji.
> >
> > SCIFIO 0.14.2 and imagej-legacy 0.5.4 are now released and uploaded to
> Fiji. If
> >you update again you should get them. Please let us know if this doesn't
> work
> >or if you still have calibration issues.
> >
> >Thanks again,
> >Mark
> >
> >
>
>
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>

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