http://imagej.273.s1.nabble.com/Problem-with-calibration-info-EXIF-data-when-opening-files-tp5008025p5008110.html
I have done that, two different images scaled in different ways, but booth in mm:
20131106-134636.0-IO.tif - radiograph, converted from DICOM image, calibrated by macro using DICOM header information
Gerald R. Torgersen
>-----Original Message-----
>From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of
>Mark Hiner
>Sent: Tuesday, June 10, 2014 2:24 PM
>To:
[hidden email]
>Subject: Re: Problem with calibration info (EXIF data) when opening files
>
>Hi Gerald,
>
> Can you use the "Help > Upload Sample Image" command in Fiji to upload
>your dataset? I need to do more in-depth debugging to see if it's a problem
>with reading the metadata of your image, or in reporting the calibration values.
>
>Thank you!
>- Mark
>
>
>On Tue, Jun 10, 2014 at 1:47 AM, Gerald Ruiner Torgersen <
>
[hidden email]> wrote:
>
>> Hi Mark,
>>
>> thank you for explaining. I have now tried the updated version, and
>> there is still an issue: My images calibrated in mm are now showing up in µm.
>> The µm are not scaled, but an image 30 x 40 mm is now showing as 30 x
>> 40 µm.
>>
>> When I turn off SCIFIO the are shown with correct unit of length (mm).
>>
>>
>> Mvh
>> Gerald R. Torgersen
>>
>> >-----Original Message-----
>> >From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of
>> >Mark Hiner
>> >Sent: Friday, June 06, 2014 5:11 PM
>> >To:
[hidden email]
>> >Subject: Re: Problem with calibration info (EXIF data) when opening
>> >files
>> >
>> >Hi Gerald,
>> >
>> >Sorry for the confusion - this is the change
>> ><
https://github.com/scifio/scifio/commit/45c1f0e6cc68492a3604c93bfbc1>> >96b
>> >e9bb49698>
>> >fixing calibration in SCIFIO (and there is a corresponding change
>> ><
https://github.com/imagej/imagej->> >legacy/commit/9176fd86289fe83c6efab355ed04674b334d6718>
>> >in imagej-legacy). These changes were complete but un-released as of
>> >last night/this morning. By default, we only update Fiji with released code.
>> >
>> >Johannes asked you to test with our development code (and thus the
>> >"SNAPSHOT" in the .jar name) but I should have just released the
>> >changes when they were ready and uploaded them to Fiji.
>> >
>> > SCIFIO 0.14.2 and imagej-legacy 0.5.4 are now released and uploaded
>> > to
>> Fiji. If
>> >you update again you should get them. Please let us know if this
>> >doesn't
>> work
>> >or if you still have calibration issues.
>> >
>> >Thanks again,
>> >Mark
>> >
>> >
>>
>>
>> --
>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>
>
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