http://imagej.273.s1.nabble.com/SPIM-multi-view-deconvolution-via-GPU-tp5008097p5008237.html
I did not check that package. I did check the free Visual Studio Express,
but that was unable to support CUDA installation. If I have any problems
> Hi Doug,
>
> that’s great! Did you check if maybe the free Visual Studio
> Redistributable package (
>
http://www.microsoft.com/en-us/download/details.aspx?id=30679) is
> sufficient for running it?
>
> Cheers,
> Stephan
>
> On Jun 13, 2014, at 16:42 , Douglas Richardson <
[hidden email]>
> wrote:
>
> > Sorry it took me awhile to reply, I didn't have a lot of time to work on
> > this this week. Here is the good news, everything seems to be working
> well
> > now. Thanks to both Stephan and Brian for your suggestions. Here's
> what I
> > discovered in the end:
> >
> > The current code is not compatible with CUDA6.0 as Stephan had suggested.
> > CUDA5.5 is needed. As Brian had recomended, I was able to instal
> CUDA5.5,
> > then update the driver for the GTX Titan Black GPU (I'm now using
> Graphics
> > Driver 337.88)
> >
> > Another note for others trying this: For a complete instal of the CUDA5.5
> > (or 6.0) toolbox, an installed copy of Visual Studio 2012 (not 2013!) is
> > required. (I currently only have the 30 day trial, hopefully everything
> > doesn't crash after 30 days.)
> >
> > The .dll and .so files only needed to be placed in the /Fiji.app
> directory,
> > not their own lib folder
> >
> > The CUDA library is added to the system path upon installation in
> Windows 7.
> >
> > I now have this running on two systems:
> >
> > 1) Windows 7 (64bit), 16GB RAM, GTX 285 GPU, CUDA 5.5, Graphics Driver
> > 320.57, Visual Studio 2012
> > 2) Windows 7 (64bit), 196GB RAM, GTX Titan Black GPU, CUDA 5.5, Graphics
> > Driver 337.88, Visual Studio 2012
> >
> > Thanks again for all the help!
> >
> > -Doug
> >
> >
> > On Wed, Jun 11, 2014 at 8:04 PM, Stephan Preibisch <
[hidden email]
> >
> > wrote:
> >
> >> Hi Brian,
> >>
> >> it seemed to be a somewhat inconsistent behavior between platforms and
> >> versions, that’s why I changed it to the manual selection in the new
> >> version. I would try lib/linux64, lib, folder directly. One of them
> should
> >> work. At least it did back then on Windows and Ubuntu.
> >>
> >> I was under time pressure because of the paper when I finished that
> code,
> >> so it is not that well done. I am mostly working on the new version now
> >> which should not have these problems any more.
> >>
> >> I hope by the end of next week it can be released.
> >>
> >> Cheers,
> >> Stephan
> >>
> >> On Jun 11, 2014, at 17:48 , Brian Northan <
[hidden email]> wrote:
> >>
> >>> Hi Stephan
> >>>
> >>> Thanks, I will try it out. Also, looking at your code in
> >>> "Multi_View_Deconvolution.java" I saw a comment (around line 825 where
> it
> >>> loads the libary) "under linux automatically checks lib/linux64". So
> >> that
> >>> mean it only checks the Fiji/lib directory under linux??
> >>>
> >>>
> >>> On Wed, Jun 11, 2014 at 5:20 PM, Stephan Preibisch <
>
[hidden email]
> >>>
> >>> wrote:
> >>>
> >>>> Thanks a lot Brian for the help!
> >>>>
> >>>> the behavior is unfortunately very different under Windows and Linux
> as
> >> we
> >>>> figured out.
> >>>>
> >>>> The new version of my plugin that is currently developed handles it
> much
> >>>> better I think, it actively looks for it and you can change the path.
> It
> >>>> will be released very soon, if you want to try it ahead of time let me
> >>>> know, I can send you jars (or here is the source
> >>>>
https://github.com/fiji/spimreconstruction/tree/revised-spimdata)! It
> >> is
> >>>> much more flexible and powerful and iterates with the BigDataViewer.
> >>>>
> >>>> Cheers,
> >>>> Stephan
> >>>>
> >>>> On Jun 11, 2014, at 17:11 , Brian Northan <
[hidden email]> wrote:
> >>>>
> >>>>> Hi Douglas
> >>>>>
> >>>>> Any luck fixing your problem? I had a similar problem working with a
> >>>> cuda
> >>>>> plugin.
> >>>>>
> >>>>> First I was getting an error something like "can't find library.so"
> >>>>>
> >>>>> 1. I had to put the native libraries in a "lib" directory directly
> >> under
> >>>>> the Fiji directory. So perhaps put the .dll in the "lib" directory.
> >>>>>
> >>>>> Then I got an error something like "can't find cudart.so"
> >>>>>
> >>>>> 2. I had to add the location of the Cuda library to my system
> library
> >>>>> path. The ubuntu cuda installer didn't do this automatically. Not
> >> sure
> >>>>> the behaviour is the same in Windows or not. But you might want to
> >> check
> >>>>> and see if the location of the cuda libaries has been added to the
> >> system
> >>>>> path.
> >>>>>
> >>>>> 3. You mention you couldn't get the newest graphics card to work
> with
> >>>> Cuda
> >>>>> 5.5. I think that might be because cuda 5.5 installs an older
> version
> >> of
> >>>>> the nvidia drivers. I think you can get the newer cards working with
> >>>> Cuda
> >>>>> 5.5. This info is for GTX 750 Ti but perhaps relevant for you as
> well.
> >>>>>
> >>>>> "The GTX 750 Ti is not supported by the driver (319.37) that is
> >> included
> >>>>> with the cuda 5.5 toolkit installer package. Download the latest
> driver
> >>>>> installer package for GeForce 750 Ti from www.nvidia.com and run
> that
> >> to
> >>>>> replace your 319.37 driver (only). You should have better results.
> Yes,
> >>>>> CUDA 5.5 is compatible with the newer driver you are installing."
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>> On Tue, Jun 10, 2014 at 11:17 AM, Johannes Schindelin <
> >>>>>
[hidden email]> wrote:
> >>>>>
> >>>>>> Hi Douglas,
> >>>>>>
> >>>>>> On Mon, 9 Jun 2014, Douglas Richardson wrote:
> >>>>>>
> >>>>>>> Wayne: Sorry, I'll stick to the Fiji bug reporter from now
> on.......
> >>>>>>
> >>>>>> The ImageJ mailing list is the best place to discuss these things:
> as
> >>>> you
> >>>>>> pointed out, Stephan keeps an eye on this list. He does not keep an
> >> eye
> >>>> on
> >>>>>> the Fiji bugzilla. SPIM registration is an ImageJ plugin after all,
> a
> >>>>>> plugin that just happens to be available in the Fiji distribution of
> >>>>>> ImageJ for users' convenience.
> >>>>>>
> >>>>>> There are other users of the SPIM deconvolution plugin that will
> >> benefit
> >>>>>> from seeing this discussion and its outcome. There is a lot of
> >> expertise
> >>>>>> on this mailing list and the use of CUDA is on the rise in
> biological
> >>>>>> image processing. I think this is in fact a perfect place to discuss
> >>>> this.
> >>>>>>
> >>>>>> The strength of the ImageJ mailing list has always been that it is a
> >>>>>> friendly place with a wide range of expertise about everything
> related
> >>>> to
> >>>>>> ImageJ, and sometimes even beyond.
> >>>>>>
> >>>>>> Let's continue to keep it that way,
> >>>>>> Johannes
> >>>>>>
> >>>>>> --
> >>>>>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >>>>>>
> >>>>>
> >>>>> --
> >>>>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >>>>
> >>>>
> >>>> --
> >>>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >>>>
> >>>
> >>> --
> >>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >>
> >> --
> >> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >>
> >
> > --
> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>
>
> --
> ImageJ mailing list:
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