Re: Recent bug at opening 16-bits series

Posted by ctrueden on Jun 30, 2014; 5:46pm
URL: http://imagej.273.s1.nabble.com/Recent-bug-at-opening-16-bits-series-tp5008495p5008499.html

Hi Gaelle,

> Since a couple of days when I open 16-bits series (z-stacks) there is
> a strange thing occurring: the stack is only composed of the first
> slice repeated. (I have these data for quite a while and already been
> able to open them properly)

I cannot replicate this problem with an up-to-date version of ImageJ. I
opened the MRI Stack sample, converted to 16-bit, multiplied the data
values by 4, saved as a 16-bit TIFF, and reopened the file, and all is
well. I tested with and without the SCIFIO feature enabled (Edit > Options
> ImageJ2, "Use SCIFIO when opening files").

Could you use the Help > Report a Bug command to submit a bug with your
system configuration (this includes a snapshot of your ImageJ
installation), and also please upload a sample non-working dataset using
Help > Upload Sample Image? The image will be kept confidential, used for
debugging purposes only.

Regards,
Curtis


On Mon, Jun 30, 2014 at 10:46 AM, Gaelle Recher <
[hidden email]> wrote:

> Dear ImageJ users and developers,
>
> Since a couple of days when I open 16-bits series (z-stacks) there is a
> strange thing occurring: the stack is only composed of the first slice
> repeated.
> (I have these data for quite a while and already been able to open them
> properly)
> Does anyone had this same bug?
> Do you have any idea of how to overcome this problem?
>
> Thanks a lot!
> Cheers,
>
> Gaelle Recher
>
> Research Associate
> Magdalena Zernicka-Goetz Group
>
> Department of Physiology, Development and Neuroscience & Gurdon Insitute
> Downing Street, Cambridge, CB2 3DY, UK
> Lab: [phone], gr373[a]cam.ac.uk
> Gaëlle Recher
>
>
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> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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