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Re: ParticleAnalyzer class and stacks

Posted by Paul van Schayck on Jul 07, 2014; 7:24am
URL: http://imagej.273.s1.nabble.com/ParticleAnalyzer-class-and-stacks-tp5008596p5008601.html

Dear Aryeh,

On Mon, Jul 7, 2014 at 8:57 AM, Aryeh Weiss <[hidden email]> wrote:

> Thank you for your reply.
> I have a student who is converting some algorithms which I implemented as
> macros to python.
> I thought that it would be cleaner (and maybe more efficient) to have the
> analyzer operate on the stack,
> just as in the macro I have a "stack" keyword.
> Also, if I generate a mask, I prefer that a stack be generated, rather then
> get each slice, and append it to a stack
> (although that can certainly be done).
>
> The API docs mention processStack, which appears to be a flag that tell it
> to process a stack (just a guess), but I dont know how to use it.
>

As far as I can tell from the ParticleAnalyzer code [1], this really
an internal option for the run() method. But maybe someone more
familiar with that code should comment on that.

Paul

[1] https://github.com/imagej/imagej1/blob/master/ij/plugin/filter/ParticleAnalyzer.java

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