Posted by
ctrueden on
Jul 10, 2014; 4:54pm
URL: http://imagej.273.s1.nabble.com/error-with-bioformat-tp5008659p5008671.html
Hi Richard & everyone,
> All of a sudden when we drag & drop LIF files into FIJI it takes a LONG
> time and only opens one image w/o any of the usual dialog boxes.
A couple of things in addition to Johannes's comments:
1) SCIFIO has a Bio-Formats plugin, which is what handles the proprietary
formats including LIF. Hence, performance should be comparable to the
Bio-Formats Importer plugin—if not, it's a bug.
2) SCIFIO does internally support opening multiple images, but at the UI
level the ImageJ integration only displays the first. We plan to resolve
this limitation soon.
Regards,
Curtis
On Thu, Jul 10, 2014 at 11:25 AM, Johannes Schindelin <
[hidden email]> wrote:
> Hi Richard,
>
> On Wed, 9 Jul 2014, Cole, Richard (HEALTH) wrote:
>
> > All of a sudden when we drag & drop LIF files into FIJI it takes a LONG
> > time and only opens one image w/o any of the usual dialog boxes.
>
> Please provide a (small) sample image which you expect to open more than
> one image.
>
> As Teresa pointed out, we switched to SCIFIO (you can switch that off in
> Edit>Options>ImageJ2) which is a very powerful concept replacing previous
> attempts to provide extensible scientific image file reading/writing.
>
> At the moment, we are working hard to address problems reported by users
> (such as yours) where image opening did not work as expected. We will be
> starting to address performance concerns soon.
>
> Ciao,
> Johannes
>
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