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Re: Tif Stacks Not Opening Correctly

Posted by J. Daniel Fenn on Jul 11, 2014; 12:15pm
URL: http://imagej.273.s1.nabble.com/Tif-Stacks-Not-Opening-Correctly-tp5008677p5008686.html

Curtis,

It does appear to open correctly when I turn off SCIFIO.  I will upload
a sample stack later today.  Thanks!

-Dan

On 07/10/2014 11:41 PM, Curtis Rueden wrote:

> Hi J. Daniel,
>
> > I have discovered that the images open fine in older version of Fiji
> > (the life-line versions).  The older versions I get all 23 planes as
> > expected.
>
> Please try running Edit > Options > ImageJ2 and disabling the "Use
> SCIFIO when opening files" option, then opening your TIFFs again. Do
> they open correctly? If so, it is a problem with the new SCIFIO support.
>
> If that is the case, it would be very helpful if you could send a
> sample non-working TIFF file using the Help > Upload Sample Image command.
>
> Thanks,
> Curtis
>
>
> On Thu, Jul 10, 2014 at 3:28 PM, J. Daniel Fenn
> <[hidden email] <mailto:[hidden email]>> wrote:
>
>     I'm curious if anyone has run in to this problem.
>
>     I have a stack saved as a .tif image (multi-page tif).  The stack
>     has 23
>     images/pages within the stack.  The stack (all 23 images) open fine on
>     any imaging program I have access to (Gimp, photoshop, exiv2, etc).
>
>     But when I open the stack in Fiji, it only finds 20 of the 23
>     images.  I
>     have this same problem on multiple images, but each one is slightly
>     different.  Some are missing 3 planes, some are missing 1, some are
>     missing 10 planes.  Again, on all other imaging software all
>     planes show up.
>
>     I have no idea where to even begin to troubleshoot this problem.  Does
>     anyone have any ideas?  I have discovered that the images open fine in
>     older version of Fiji (the life-line versions).  The older versions I
>     get all 23 planes as expected.
>
>     Am I doing something wrong?
>
>     --
>     ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
>


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