bioformats import nd2-Files

Posted by karo03 on
URL: http://imagej.273.s1.nabble.com/bioformats-import-nd2-Files-tp5008687.html


Hi I am just trying to read Nikon nd2 Files with Fiji (and pure ImageJ too).

One results in a hyperstack 1280x960x3x106, which is ok, the other results in a sequence of 104 images. The latter nd2 contains 105 images according "NIS Elements Viewer"! One image more or less might be acceptable, but how can I merge that set of images? Additionally the metadata of the latter show series alphabethical sorted.

Trying to do "Images to Stack" gives the message "There should be at least two images open", in fact 104 are open! Seemingly the opened images are 1-dim 3-color hyperstacks!

Perhaps there is some knowledge on the net to configure the bioformats importer to merge that heap of images?

Thanks in advance

Karsten


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