http://imagej.273.s1.nabble.com/Tif-Stacks-Not-Opening-Correctly-tp5008677p5008728.html
> I just uploaded it. Sorry for the delay.
No worries, we received the file and can reproduce the problem. Both SCIFIO
20 planes instead of the full 23. I filed an issue:
On Mon, Jul 14, 2014 at 12:00 PM, J. Daniel Fenn <
> Hi Curtis,
>
> I just uploaded it. Sorry for the delay.
>
> I didn't get any sort of confirmation that it uploaded. The file was
> named 02-4_PE.tif
>
> Let me know if I can help out in any other way.
>
> Best,
> -Dan
>
> If it didn't upload I can maybe try sending it to you directly. I don't
> know how to tell for sure if it uploaded or not.
>
>
> On 07/14/2014 12:23 PM, Curtis Rueden wrote:
>
> Hi Dan,
>
> > I will upload a sample stack later today.
>
> Did you get a chance to upload a sample TIFF yet? I don't see any new
> recent uploads since your mail.
>
> > But when I open the stack in Fiji, it only finds 20 of the 23 images.
>
> I would really like to investigate this bug, since we have had at least
> one other report of "missing image planes" similar to this.
>
> Thanks,
> Curtis
>
>
> On Fri, Jul 11, 2014 at 7:15 AM, J. Daniel Fenn <
>
[hidden email]> wrote:
>
>> Curtis,
>>
>> It does appear to open correctly when I turn off SCIFIO. I will upload a
>> sample stack later today. Thanks!
>>
>> -Dan
>>
>>
>> On 07/10/2014 11:41 PM, Curtis Rueden wrote:
>>
>> Hi J. Daniel,
>>
>> > I have discovered that the images open fine in older version of Fiji
>> > (the life-line versions). The older versions I get all 23 planes as
>> > expected.
>>
>> Please try running Edit > Options > ImageJ2 and disabling the "Use
>> SCIFIO when opening files" option, then opening your TIFFs again. Do they
>> open correctly? If so, it is a problem with the new SCIFIO support.
>>
>> If that is the case, it would be very helpful if you could send a
>> sample non-working TIFF file using the Help > Upload Sample Image command.
>>
>> Thanks,
>> Curtis
>>
>>
>> On Thu, Jul 10, 2014 at 3:28 PM, J. Daniel Fenn <
>>
[hidden email]> wrote:
>>
>>> I'm curious if anyone has run in to this problem.
>>>
>>> I have a stack saved as a .tif image (multi-page tif). The stack has 23
>>> images/pages within the stack. The stack (all 23 images) open fine on
>>> any imaging program I have access to (Gimp, photoshop, exiv2, etc).
>>>
>>> But when I open the stack in Fiji, it only finds 20 of the 23 images. I
>>> have this same problem on multiple images, but each one is slightly
>>> different. Some are missing 3 planes, some are missing 1, some are
>>> missing 10 planes. Again, on all other imaging software all planes show
>>> up.
>>>
>>> I have no idea where to even begin to troubleshoot this problem. Does
>>> anyone have any ideas? I have discovered that the images open fine in
>>> older version of Fiji (the life-line versions). The older versions I
>>> get all 23 planes as expected.
>>>
>>> Am I doing something wrong?
>>>
>>> --
>>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>>
>>
>>
>>
>
>