http://imagej.273.s1.nabble.com/Help-needed-with-3D-Viewer-tp5008273p5008782.html
Unfortunately, not really. I am not an expert on the 3D Viewer code. That
> file. The reason is probably that I work in a network with remote
> returns nonsense. Unfortunately, Fiji uses this java function to
> determine where to write some user settings. Johannes and Stefan
> environment variable. This function from 2010 has been missing in all
I agree; I am skeptical of the preferences issue being the cause. More
likely is an issue with your graphics card driver. I assume the "Test
> ||Hi Curtis,
> thanks for responding. Cool that I was not the only one experiencing this.
> Next time I will search the bug tracker too and not just the list. I did
> try to get the debugging mode to run and I got some output I don't really
> know how to interpret. Here's the content of the console window from the
> starting command until opening 3D Viewer from Fijis plugin menu.
>
> ImageJ-win32.exe -Dj3d.debug=true-- --console
>
> d:\Fiji Backup\fiji-lifeline02jun14\Fiji.app>[INFO] Found 677 plugins.
> log4j:WARN No appenders could be found for logger
> (org.bushe.swing.event.EventSe
> rvice).
> log4j:WARN Please initialize the log4j system properly.
> log4j:WARN See
http://logging.apache.org/log4j/1.2/faq.html#noconfig for
> more in
> fo.
> [INFO] Found 11 DataType plugins.
> [INFO] Found 2 Platform plugins.
> [INFO] Configuring platform: org.scijava.plugins.platforms.
> windows.WindowsPlatfo
> rm
> [INFO] Configuring platform: org.scijava.platform.DefaultPlatform
> [INFO] Found 0 scripts
> [WARNING] Overridden plugin ij.plugin.AboutBox is blacklisted
> [WARNING] Overridden plugin ij.plugin.LutLoader("3-3-2 RGB") is blacklisted
> [WARNING] Overridden plugin ij.plugin.Commands("quit") is blacklisted
> [INFO] Found 668 legacy plugins (plus 147 ignored).
> [INFO] Found 22 InputWidget plugins.
> version = 1.5
> \\fileserver\profiles$\Desktop\.ImageJ_3D_Viewer.props (Das System kann
> die ange
> gebene Datei nicht finden)
> nFrames = 1
>
> Can you confirm from reading the console output, whether I did the
> diagnose mode right? If not, how do I use the command line correctly?
> It seems that 3D-Viewer is unable to read the ImageJ_3D_Viewer.props
> file. The reason is probably that I work in a network with remote storage
> of the personal profile. In this case, the Java function
> "system.get.property(user.home)" returns nonsense. Unfortunately, Fiji
> uses this java function to determine where to write some user settings.
> Johannes and Stefan discussed this in Bug 187 and implemented a clever
> function that would allow the user to specify a storage folder for settings
> through an environment variable. This function from 2010 has been missing
> in all more modern versions of Fiji since a year or so. It hasn't created
> serious problems, because I haven't run into anything yet that just doesn't
> work without the saved settings.
>
> I would assume that 3D Viewer uses default settings as soon as the file
> cannot be read and so I am a bit doubtful whether this issue would be the
> reason for the strange behavior of 3DViewer. When I have the time I shall
> try to reproduce on a machine in local mode where Fiji is able to save the
> settings. If that should do the trick I will let you guys know and send a
> new bug report.
> Best regards
> Christian
>
>
>
> Christian Goosmann Mikroskopie Max-Planck-Institut für Infektionsbiologie
> Campus Charité Mitte Charitéplatz 1 10117 Berlin Tel.: +49 30 28460 388
> Curtis Rueden wrote:
>
>> Hi Christian,
>>
>> > instead of shifting the object, any movement of the mouse makes the
>> > object disappear rapidly to the right, out of the viewer window.
>>
>> Until recently, there was a bug in the bug tracker about this:
>>
>>
http://fiji.sc/bugzilla/show_bug.cgi?id=432>>
>> I just closed it as "works for me", since I couldn't reproduce it.
>>
>> And I still cannot reproduce with an up-to-date Fiji using the Bat
>> Cochlea Volume sample.
>>
>> Maybe it is something about your Java3D installation...
>>
>> Could you have a look at:
>>
http://wiki.imagej.net/Debugging_intro#Debugging_Java3D_issues>> ?
>>
>> Thanks,
>> Curtis
>>
>>
>> On Thu, Jun 19, 2014 at 6:09 AM, Christian Goosmann <
>>
[hidden email] <mailto:
[hidden email]>>
>> wrote:
>>
>> Found a workaround. Using the arrow keys while holding shift will
>> shift the view, it is just not possible using the mouse.
>>
>>
>> ---
>> Christian Goosmann
>> Mikroskopie
>> Max-Planck-Institut für Infektionsbiologie
>> Campus Charité Mitte
>> Charitéplatz 1
>> 10117 Berlin
>> Tel.: +49 30 28460 388 <tel:%2B49%2030%2028460%20388>
>>
>>
>> Christian Goosmann wrote:
>>
>> Dear list
>> when I use 3D Viewer to view volumes out of an image stack I
>> am not able to shift the view. According to the documentation,
>> you drag with the left mouse button while the hand tool is
>> active. But instead of shifting the object, any movement of
>> the mouse makes the object disappear rapidly to the right, out
>> of the viewer window. You can get it back by 'view>center
>> selected' but it is not shifted. I get the same result, using
>> the bat cochlea sample stack in updated FIJI win 32, lifeline
>> version of 2013 of Fiji win 32 and on lifeline version of 2014
>> on Fiji win 64 on a more powerful machine. Am I missing any
>> important settings or options that I have to change so that 3D
>> viewer would act as documented? Any useful hints?
>> Thank you so much
>> Christian
>>
>>
>> --
>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>
>>
>>
>