Posted by
Jan Eglinger on
Jul 29, 2014; 9:34am
URL: http://imagej.273.s1.nabble.com/Open-Next-not-working-tp5008920p5008927.html
Hi Richard,
On 28.07.2014, 11:49 PM, Richard Mansfield wrote:
> Hi, I am looking for help with an issue using the Fiji version of ImageJ.
> File --> Open Next does not open the next image in my directory. I am
> measuring florescence intensity in a series of images captured with Zeiss
> software (.czi). Am I missing something or is this a bug? --Thanks, Richard
>
A similar question has recently been asked on stackoverflow.com:
http://stackoverflow.com/q/24975562/1919049however without mentioning which file types were used.
'File > Open Next' seems to work only for file types known to core
ImageJ, not those which are opened by Bio-Formats or SCIFIO.
Interestingly, the *getFileType(path)* method of ij.io.Opener returns
type 12 (=txt) when provided with a path pointing to a .czi file. That's
clearly a bug. To make sure it doesn't get missed, you might also want
to report it via 'Help > Report a bug'.
Here's the Beanshell script I used to test the getFileType method:
import ij.io.Opener;
import ij.IJ;
path = IJ.getFilePath("Choose file");
opnr = new Opener();
type = opnr.getFileType(path);
IJ.log(type.toString() + ": " + Opener.types[type]);
Cheers,
Jan
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