Re: Not so easy ROIs determinations

Posted by Michael Schmid on Jul 30, 2014; 1:58pm
URL: http://imagej.273.s1.nabble.com/Not-so-easy-ROIs-determinations-tp5008966p5008970.html

Hi Philippe,

one possible solution might be a macro like the following:

Threshold, Analyze particles, recording XStart, YStart to the Results table.
  run("Analyze Particles...", "display clear record");

Then iterate over the results Table. For each entry, call the Versatile Wand plugin with default options (i.e., 'record holes' should be unchecked) at XStart, YStart, and add to the ROI Manager.
  http://imagejdocu.tudor.lu/doku.php?id=plugin:segmentation:versatile_wand:start


Michael
________________________________________________________________
On Jul 30, 2014, at 15:21, Philippe CARL wrote:

> Dear all,
>
> From the following picture :
>
> http://punias.free.fr/ImageJ/ring.tif
>
> I would like to extract automatically (i.e. by means of the use of a macro
> and/or plugin) the following ROI set:
>
> http://punias.free.fr/ImageJ/RoiSet.zip
>
> Does somebody have an idea on the best strategy to perform this?
>
> I thank you very much in advance for your help.
>
> My best regards,
>
> Philippe
>
>
>
> Philippe CARL
>
> Laboratoire de Biophotonique et Pharmacologie
>
> UMR 7213 CNRS - Université de Strasbourg
>
> Faculté de Pharmacie
>
> 74 route du Rhin
>
> 67401 ILLKIRCH
>
> Tel : [phone]
>
>
>
>
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